Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01274 ATGACCGGTTCTTTCGCTCAGTGTGTGGTACACGCCAACGCTTCTTTTCTTCTCCGTTTCAGTAGCAACAACAATAACAATAACAAGACTATGTTTACTCTCTCCACTACTTCACCGCCAACCGCATTCTTCGCACTTCCTAGGGTTCCTTCTTCTTCTTCTTCTTCTTCTAAGCCTCCTTCGATTTATCTTCGATCTTCTCCTTCTTGCTGTTGCTCTCTCACTTTCAAGGAGAACGTTGTCTCCGCTAACATGGCTGCTTCTGTCTCTTCTAGAACTTTCCTCAATGCTCAAAACGAACAAGAGCTTCTTTCTGGAATAAGGAAGGAGGTAGAAGCGGGATCTCTGCCTCCTAATGTTGCTGCAGGCATGGAAGATGTTATCAAAAGTGGAGATCCCAAAGCAAACGAGCTTGTACTGTCAAATATGATTGTTTTATTAGATCGCGTATTTTTGGATGTGACGGATCCTTTCGTCTTTCAACCACACCACAAAGCAAAGAGAGAACCTTTTGACTACTACATGTTAGGTCAAAATTATATCCGTCCTTTAGTTGATTTCAAAAATTCTTATGTTGGGAACATGCCCCTTTTCATTGAAATGGAAGAGAAACTTAAGCAGGGACACAATGTCATCTTGATGTCAAATCACCAATCGGAAGCAGACCCAGCTATCATTGCACTGCTGCTTGAAATGCGACTCCCATATATTGCTGAAAACATGACCTATGTAGCAGGAGATAGAGTTATAACTGATCCTCTATGCAAGCCCTTCAGTATTGGCAGGAATCTCATTTGTGTTTACTCTAAAAAGCACATGCTTGATGATCCAGAGCTTATAGAGATGAAAAGAAAAGCAAATACACGAAGTCTGAAGGAAATGGCTATGCTTTTAAGGAGTGGATCGCAGATAGTCTGGATTGCCCCAAGTGGTGGTAGGGATCGACCTGATCCCCAGACTGGGGAATGGGTGCCGGCACCCTTTGATTCTTCTTCAGTTGATAATATGCGGAGGCTTGTCGAACATTCTGGTCCACCAGGTCATGTCTATCCTTTGGCAATATTGTGCCATGATATAATGCCCCCTCCACTAAAGGTTGAAAAAGAAATTGGGGAGAGAAGAATTATATCCTTTCATGGGGCTGGCTTATCCGTGGCTCCAGAGATTAGCTTTTGTGAAACCACTGCTGCTTGTAAAAATCCTGAACAGGCTAAGGAGGCATATACAAAAGCCTTGTACGATTCTGTGACTCTGCAATATAATGTGTTGAAGTCTGCAATACATGGGAAAAAAGGATTAGAAGCATCAACTCCTGTTGTTTCTTTGTCACAGCCATGGAACTAG 1344 0.4271 MTGSFAQCVVHANASFLLRFSSNNNNNNKTMFTLSTTSPPTAFFALPRVPSSSSSSSKPPSIYLRSSPSCCCSLTFKENVVSANMAASVSSRTFLNAQNEQELLSGIRKEVEAGSLPPNVAAGMEDVIKSGDPKANELVLSNMIVLLDRVFLDVTDPFVFQPHHKAKREPFDYYMLGQNYIRPLVDFKNSYVGNMPLFIEMEEKLKQGHNVILMSNHQSEADPAIIALLLEMRLPYIAENMTYVAGDRVITDPLCKPFSIGRNLICVYSKKHMLDDPELIEMKRKANTRSLKEMAMLLRSGSQIVWIAPSGGRDRPDPQTGEWVPAPFDSSSVDNMRRLVEHSGPPGHVYPLAILCHDIMPPPLKVEKEIGERRIISFHGAGLSVAPEISFCETTAACKNPEQAKEAYTKALYDSVTLQYNVLKSAIHGKKGLEASTPVVSLSQPWN* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01274 447 SMART plsc_2 211 357 IPR002123 GO:0016746
Rops1g01274 447 PIRSF G3POAT 1 447 IPR016222 GO:0004366|GO:0006650
Rops1g01274 447 Pfam Glycerol-3-phosphate acyltransferase N-terminal 91 158 IPR023083 GO:0004366
Rops1g01274 447 PANTHER GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE, CHLOROPLASTIC 77 447 IPR016222 GO:0004366|GO:0006650
Rops1g01274 447 Pfam Acyltransferase 199 354 IPR002123 GO:0016746
Rops1g01274 447 Gene3D - 89 156 IPR038114 -
Rops1g01274 447 Gene3D - 157 438 - -
Rops1g01274 447 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 91 446 - -
Rops1g01274 447 CDD LPLAT_GPAT 188 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01274 Rops-Chr1 29104010 29113892 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01274 91 447 Acyl Lipid Metabolism Gene Families AT1G32200 68.767 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01274 K00630 - gmx:100789434 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01274 1 29104010 29113892 Rops1g01274 1 29104010 29113892 ECH