Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01258 ATGTCGGTTATATGCTTTCTTGGGCACGGTTTGCTCCGCAGCAGAGTGAACTTCAAAAACCAATGCGTGTTTAGGTTGTATTCTTCTCCTGCATTGATGTGGGAAGACCAAGTGTTTGATGAAAGTCCAAAACTAGATGCCAATTTTGGGATAAAGAGGTCTGTGGTCCCAGTTCCCGGAACCAGGAAGGAGTTGTTACTTAAAGTGGTTAGGGTGTTTAAGTCCTTGAATTGGGGGGTTGCAAGAGAAATAAGGTTTGGGAATTGGGTCGAGAGTCATGGGTTTTCTCATTCAATCAATTGCTTTAGAATCATCATTCACACTTTTGCATTGGCAGGGATGCGTTTGGAAGTGTTTGCTTTGCTTAGAGATATTGTTGGATACTATAATGAGGCCAAGTATGATGCATTCAAATTGTTTTCAACTTTGCTTGATTCACCCCATCATGTGGAAAGATCTGTTGTTGTGTTTGACGTGCTTATTAAAGTATTTGCTTCCAACTCCATGCTTGAACATGCTCTTGATGTGTTTTTGAATGCTAAAAATATTGGAATTCAACCTGATATAATGTCTTGCAATTTCTTGTTGAAATGCTTGGTAGAAGCAAATAGAGTGGAGTTTGTAAGATGGCTTTTTGAGCAATTGAAAGACTCTGGTCCATTGCCAAATATCCGCACCTATACAATCATGATGAACTTTTATTGTAGATATGCTGATATTAGACGGGCTGCTGAGATTTTAGGAAAAATATATCAGAGTGGAGAGAAGCCAACTGTTGTCACATATAGTACTTATATTCATGGACTTTGTAAAGTTGGTTTTGTTGAGGTTGCTCTGAAGTTAATTCGTAAGGTGCACTATGAAATCCAGCCTCTGAATAACTATTGCTTTAATGCTGTAATTTATGGATTTTGTCAAAGAGGTGAAGTCCATGAAGCTTTGGAAGTATTGGAAGAAATGAAGGACTCTGGAAAATTGCCTGATGTTTATAGCTACAGCATTTTAATTGATGCATTCTGCAAGAAAGGGGATGTAGAGAAAGCTCTTGACTTGATGGAGAAAATGCAGCTCTCCCAGATAAAACCGTCCATTGTTATCTACACCTCCCTCATCCATGGTCTATGCAAGAATAAGCAGATGCAAATGTCAATGAAGATTTTCCGTGATATTGGTGCTTCTGGTTACAAATATGATCTTACTGTTTATGAAACTTTAATTCATGGATTTTGCATGCAAGGTGATATGGATTCAGCCATCAAACTTTTGGAGGAGATGAGGAGCAATAATTTGGTTCCTTCTGCTTTCAGTTGCCACAGTCTAATTAGGGGATTCTACAAACTGGGACTCTTGGATAAGGCATCAGAAGTTTTTAATATCATGCTCCAAGATGGCATCATACCAGATACAATCGCTTGCAATCATATTCTTAGTGCATGCTGCAGGGAAGGTCACTTCAAAGAAGCCTTGACACTGTTGGAGAAATTCCAAAATCTTGGAATTAACCTCAATCCACATTCATATAATGAAATCATCCACAAGCTTTGCCAAGAAAGTTATCCAGAAAAGGCACTGGAGCTCCTGCCAACAATGCTTAAAAGGAATGTACTTCCAGGAGTTGTTAATTATAGTGCTCTTATAACTGGCTTTGCCAAACAGTTAAATTCAAAAAAGGCTGTGAAGTTATTCACAAGAATGGTAAAAGTGGGGATCGCTTTCAACACCATCACATACACAATTCTTATGAACTTATATAGCTGTAATCGCAAAATGCATGAAGCTTATCGCTTATTTAAGGAAATGAAAGAAAGGGGTTTGTGTCCAGATTGTTTTTCGTATACAACTTTAATAGCTGGCTTTTGTAATACTGGAGAAATGGAAAAGGCCTGGGCATTATTTGAAGAAATGTCGGGGGAAGGCTGTTTGCCAAATGTGTTTACTTATACTTGTTTGATTGATGGATTTTGCAAGTCAAACAGGATAGATTGGGCCTCACAGCTGTTTGATAAAATGAACAGAGATGCAGTTATTCCTCCTGATGTTGTAACTTACACTGTCCTCATTGCTGCGTACTATAAGCATGGGTACATGGATCGCGCACATGAGCTATATGACAAAATGAAGGAAAGGGGTATTTTGCCGGATCATATTTGGTATACAACTTTAATAGCTGGCTTTTGTAATACTGGAGAAATGGAAATTGCCCGGGCATTATTTGAAGAAATGTCGAGGAAAGGCTGTTTGCCAAATGTAATTACTTATACTTGTTTGATTGATGGATATTGCAAGTCAAACAGGATAGATTTGGCCTCACGGCTGTTTGATGAAATGAACAGAGATGCAGTTATTCCTGACGTTGTAACTTACAATGTCCTCATTGCTTGGTACCTTAAGCACAGGTACATAGATCACGCACATAAGCTGTATGACAAAATGAAGGCAAAGGGTATTTTGCCAGATGATGTAACTCATAAGGTTCTGGGTCTGGAAGCTGGTGCAATTCAAGATGGTTAG 2511 0.3867 MSVICFLGHGLLRSRVNFKNQCVFRLYSSPALMWEDQVFDESPKLDANFGIKRSVVPVPGTRKELLLKVVRVFKSLNWGVAREIRFGNWVESHGFSHSINCFRIIIHTFALAGMRLEVFALLRDIVGYYNEAKYDAFKLFSTLLDSPHHVERSVVVFDVLIKVFASNSMLEHALDVFLNAKNIGIQPDIMSCNFLLKCLVEANRVEFVRWLFEQLKDSGPLPNIRTYTIMMNFYCRYADIRRAAEILGKIYQSGEKPTVVTYSTYIHGLCKVGFVEVALKLIRKVHYEIQPLNNYCFNAVIYGFCQRGEVHEALEVLEEMKDSGKLPDVYSYSILIDAFCKKGDVEKALDLMEKMQLSQIKPSIVIYTSLIHGLCKNKQMQMSMKIFRDIGASGYKYDLTVYETLIHGFCMQGDMDSAIKLLEEMRSNNLVPSAFSCHSLIRGFYKLGLLDKASEVFNIMLQDGIIPDTIACNHILSACCREGHFKEALTLLEKFQNLGINLNPHSYNEIIHKLCQESYPEKALELLPTMLKRNVLPGVVNYSALITGFAKQLNSKKAVKLFTRMVKVGIAFNTITYTILMNLYSCNRKMHEAYRLFKEMKERGLCPDCFSYTTLIAGFCNTGEMEKAWALFEEMSGEGCLPNVFTYTCLIDGFCKSNRIDWASQLFDKMNRDAVIPPDVVTYTVLIAAYYKHGYMDRAHELYDKMKERGILPDHIWYTTLIAGFCNTGEMEIARALFEEMSRKGCLPNVITYTCLIDGYCKSNRIDLASRLFDEMNRDAVIPDVVTYNVLIAWYLKHRYIDHAHKLYDKMKAKGILPDDVTHKVLGLEAGAIQDG* 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01258 836 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 328 362 IPR002885 -
Rops1g01258 836 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 608 642 IPR002885 -
Rops1g01258 836 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 643 677 IPR002885 -
Rops1g01258 836 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 749 783 IPR002885 -
Rops1g01258 836 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 222 IPR002885 -
Rops1g01258 836 Pfam Pentatricopeptide repeat domain 150 200 IPR002885 -
Rops1g01258 836 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 538 572 IPR002885 -
Rops1g01258 836 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 784 818 IPR002885 -
Rops1g01258 836 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 432 IPR002885 -
Rops1g01258 836 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 328 584 - -
Rops1g01258 836 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 679 713 IPR002885 -
Rops1g01258 836 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 468 502 IPR002885 -
Rops1g01258 836 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Rops1g01258 836 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 573 607 IPR002885 -
Rops1g01258 836 SUPERFAMILY HCP-like 290 462 - -
Rops1g01258 836 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Rops1g01258 836 SUPERFAMILY TPR-like 651 813 IPR011990 GO:0005515
Rops1g01258 836 Pfam PPR repeat 681 711 IPR002885 -
Rops1g01258 836 Pfam PPR repeat 365 394 IPR002885 -
Rops1g01258 836 Gene3D Tetratricopeptide repeat domain 61 215 IPR011990 GO:0005515
Rops1g01258 836 Gene3D Tetratricopeptide repeat domain 216 288 IPR011990 GO:0005515
Rops1g01258 836 Gene3D Tetratricopeptide repeat domain 778 827 IPR011990 GO:0005515
Rops1g01258 836 Gene3D Tetratricopeptide repeat domain 661 777 IPR011990 GO:0005515
Rops1g01258 836 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Rops1g01258 836 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 433 467 IPR002885 -
Rops1g01258 836 NCBIfam pentatricopeptide repeat 645 679 IPR002885 -
Rops1g01258 836 NCBIfam pentatricopeptide repeat 786 819 IPR002885 -
Rops1g01258 836 NCBIfam pentatricopeptide repeat 751 784 IPR002885 -
Rops1g01258 836 NCBIfam pentatricopeptide repeat 718 750 IPR002885 -
Rops1g01258 836 NCBIfam pentatricopeptide repeat 365 398 IPR002885 -
Rops1g01258 836 NCBIfam pentatricopeptide repeat 330 363 IPR002885 -
Rops1g01258 836 NCBIfam pentatricopeptide repeat 610 644 IPR002885 -
Rops1g01258 836 NCBIfam pentatricopeptide repeat 401 433 IPR002885 -
Rops1g01258 836 NCBIfam pentatricopeptide repeat 575 609 IPR002885 -
Rops1g01258 836 NCBIfam pentatricopeptide repeat 471 503 IPR002885 -
Rops1g01258 836 NCBIfam pentatricopeptide repeat 542 573 IPR002885 -
Rops1g01258 836 NCBIfam pentatricopeptide repeat 681 714 IPR002885 -
Rops1g01258 836 NCBIfam pentatricopeptide repeat 295 329 IPR002885 -
Rops1g01258 836 NCBIfam pentatricopeptide repeat 226 258 IPR002885 -
Rops1g01258 836 NCBIfam pentatricopeptide repeat 436 469 IPR002885 -
Rops1g01258 836 Gene3D Tetratricopeptide repeat domain 569 660 IPR011990 GO:0005515
Rops1g01258 836 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 714 748 IPR002885 -
Rops1g01258 836 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 153 187 IPR002885 -
Rops1g01258 836 SUPERFAMILY HCP-like 405 604 - -
Rops1g01258 836 Gene3D Tetratricopeptide repeat domain 416 566 IPR011990 GO:0005515
Rops1g01258 836 Gene3D Tetratricopeptide repeat domain 289 415 IPR011990 GO:0005515
Rops1g01258 836 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 503 537 IPR002885 -
Rops1g01258 836 Pfam PPR repeat family 400 446 IPR002885 -
Rops1g01258 836 Pfam PPR repeat family 783 826 IPR002885 -
Rops1g01258 836 Pfam PPR repeat family 222 271 IPR002885 -
Rops1g01258 836 Pfam PPR repeat family 467 516 IPR002885 -
Rops1g01258 836 Pfam PPR repeat family 607 656 IPR002885 -
Rops1g01258 836 Pfam PPR repeat family 537 582 IPR002885 -
Rops1g01258 836 Pfam PPR repeat family 293 341 IPR002885 -
Rops1g01258 836 Pfam PPR repeat family 713 762 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01258 321 826 Glycosyltransferase AT1G05670 30.059 3.65e-67 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01258 - - gmx:100818511 1056.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01258 1 28839734 28845238 Rops1g01258 1 28839734 28845238 ECH