Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01245 ATGGCAATGAGCAACAATGTGATAGGAGTCATCAACTTTGTTGCTGTGCTCCTCTCAATCCCAATCATTGGTGCTGGAATATGGCTAACAAATGAACCAGCCAATTCATGTGTCAAGTTTCTACAATGGCCTGTTATCATACTTGGGGTTCTTATCTTGGTTGTGGCTTTGGCAGGTTTCATTGGAGGCTTTTGGAGAATCTCATGGCTCCTCATATTTTACCTCATTGCCATGCTTGTGCTCATTATATTGCTAGTTTGCTTGGTGGTTTTCATCTATATGGTTACCATTCGAGGTCATGGTAACATTGAACCCAATAGGTCTTACTTGGAATATCATTTGGATGACTTCTCTGGCTATCTTCGTCGTAGGGTAAGAAGTCCATTCAAGTGGGATCGCATTAGAAGCTGTCTTAGCTCAACAAACATGTGTGGTGAGTTGAACCAAAGCTACCGAATGGCTCAGGACTTCTTTAACGCACATCTAACACCCATGCAGTCAGGGTGCTGCAAGCCACCAACGCAATGTGCATACACGTTTGTGAACCCAACCTATTGGATTAGCCCTATAAACAATGCAGCAGATATGGATTGCCTGCAGTGGAGCAACGACCAAACACAACTTTGCTACGGTTGTGACTCATGCAAGGCTGGTCTATTGGCAAATCTTCGGAAGGAATGGAGAAGGGCCAATGTGATATTGATCATCACTGTTGTTGTTTTAATAGTGGTATATTTGATAGGGTGCTGTGCCTTTAGGAATGCCAAAACTGAGGATCTCTTCCGCAAATACAAACAAGGCTATACTTAA 810 0.4309 MAMSNNVIGVINFVAVLLSIPIIGAGIWLTNEPANSCVKFLQWPVIILGVLILVVALAGFIGGFWRISWLLIFYLIAMLVLIILLVCLVVFIYMVTIRGHGNIEPNRSYLEYHLDDFSGYLRRRVRSPFKWDRIRSCLSSTNMCGELNQSYRMAQDFFNAHLTPMQSGCCKPPTQCAYTFVNPTYWISPINNAADMDCLQWSNDQTQLCYGCDSCKAGLLANLRKEWRRANVILIITVVVLIVVYLIGCCAFRNAKTEDLFRKYKQGYT* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01245 269 PRINTS Transmembrane four family signature 65 93 - -
Rops1g01245 269 PRINTS Transmembrane four family signature 6 29 - -
Rops1g01245 269 PRINTS Transmembrane four family signature 38 64 - -
Rops1g01245 269 PANTHER TETRASPANIN-8-RELATED 1 258 IPR044991 GO:0009734|GO:0016020
Rops1g01245 269 Pfam Tetraspanin family 6 251 IPR018499 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01245 Rops-Chr1 28603187 28605194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01245 1 269 Miscellaneous Gene Families AT5G46700 72.862 1.21e-139 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01245 - - gmx:100795775 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01245 1 28603187 28605194 Rops1g01245 1 28603187 28605194 ECH
Rops1g01245 1 28603187 28605194 Rops2g02848 2 49627906 49629989 PCT