Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01236 ATGTCTTCATCACATTCTCCATCTAAGGACCAAATGAACTCACCAGTTTCCGAAACCCTTGACGGGCATTCTCCATTGGTCCGTTCTTTACCAAATCTCGACGGGGCTTCCGTTCAATCCCCTGTCCAAGCTTACTCTCCGTTAATGTTAACCGCCGAGGATTTTTATCCCGGCATTTTTGACTATGAAGCTCCACGAGAGAATCTTGATGGCCTGTGTTCCCCTTTCCGGGCGATCAACGATGATTCAACATGGACGACGGAGTTGGCTTCTTCGTCAAATGTTTCCGATATAGCATCAGAATTGTTGAGCCAGGACCAGGCCCCCGATTTAAGCTGGCTTTTCACTCCAAATAACTATGAAACTTCTACCTCTTTCCCTCAAAATAACGACGAAACTTCTACCTCTACAATTGTACCTTCCGGAGTTGGTGCTGGGCTTAAAAACCTTGGGAACACGTGCTTTCTTAATGCTATAATGCAATGCTTCACGCACACTGTTCCCTTAGTCAAGGGTCTACGATCATGCACTCATTCTGCCCCTTGTGATGGTCACACTGGTGGGTTCTGTGTTATTTGCGCTTTCCGTGACCATATCAACCGTTCCCTAGCGTCTTCGGGAAGAGTCCTCTCCCCGTGGAACCTTGTTAATAATTTAAGCCATCCTTTAATTAATGCAAGGTTAGTTGCATTTTTACATCTGGCTGTTGTGATCCATAACCACGAAATAGATTTTTGTTCTATGTTTAGAAGACAACAGCAGGAGGATGCACATGAATTTATGCAGTGTGCATTAGACAAACTGGAAAGATGTTTCCTAGATTTGAAGAAGAAGAATATAAATTTTGAAGATGATAACCTTGTAGAGAAAGTATTTGGTGGTCGTCTCCTCAGCAAACTTCGATGTGGTAACTGTAGCCGCTTTTCTGACACTTACGAGCCACTGATTGACCTTAGTCTAGAGATTGAAAATGTAGACACCCTCTCAAGTGCTCTTGAATCTTTCACTAAGGTGGAAAACATTGATGCACAGTTTAGATGTGATGGCTGCAAGGAAAAAGTGTCTATGGAGAAGCAGCTTAGGTTGCATCAGACACCTATCATTGCAGCATTTCATTTGAAAAGATTTAAGACAGATGGTATCGCTGTTCAGAAGATTGATAAACATGTTGTTTTTCCACTAGAGTTGGACTTGCAGCCTTACACCATTTCTAATGAAAACAATAATGTACCATTGAAATATGATCTATATGCAGTAGTTGTGCATAATGGATTTTCATCCACTTCAGGGCATTACTTTTGCTTTGTTCGTTCTGCTTCAGAGATATGGCATAAGTTGGATGATTCAATGGTTACTAAGGTCTCAGGAGACTGTGTGCTGTCTCAGGAAGCATACTTATTGTTTTATGCACGACAGGGGACACCATGGTTTTCAAGTATTATGGATTCTCCCAATATATCTCCGAAGTCTGTTTTAGACATGATGGCAAATACTGAACAGGGCAAGGCTGTTGAATCCAAAGAATTTTCTGAGCAGCAGGTTGATTATTATTGTCAAGAAACAAATATCCCTGTCCAAGTGCAACCTGAGAATAATGCCATCTTGAATGGTATTGCCATGGTTAAAGGTAATTCATGCAGGGAGAATGTTGCTCTCGATGAAAACAAGACCTGTCATGAGGCTGTTGATGATGGTTTCCATCCTTTAACTCCTACCAGCTCCCCTTCTGATGCTGAAAAGAGTTTCCACATCTCACGTGATCATTTGAAAAAGGAGAATCGGGGAAGCTTTAAGAAACCATCAAACAAGTTTGCGGGGGATTCTACAAGACAAGAGGCCGCCAAATATGCTAGTAAAATGATGCCTGATCCAAGGAGAGATGCTTTACTTGGATTAATGGGTCTGCCTAACGAAGCTTCCTCGGACAAGAATAGAAGAATTACGGACTCGTCGCAGTGTAAGGCAGGCAACCCTAGTTCCAGCAAAAAATCAAGACAATAG 2001 0.4218 MSSSHSPSKDQMNSPVSETLDGHSPLVRSLPNLDGASVQSPVQAYSPLMLTAEDFYPGIFDYEAPRENLDGLCSPFRAINDDSTWTTELASSSNVSDIASELLSQDQAPDLSWLFTPNNYETSTSFPQNNDETSTSTIVPSGVGAGLKNLGNTCFLNAIMQCFTHTVPLVKGLRSCTHSAPCDGHTGGFCVICAFRDHINRSLASSGRVLSPWNLVNNLSHPLINARLVAFLHLAVVIHNHEIDFCSMFRRQQQEDAHEFMQCALDKLERCFLDLKKKNINFEDDNLVEKVFGGRLLSKLRCGNCSRFSDTYEPLIDLSLEIENVDTLSSALESFTKVENIDAQFRCDGCKEKVSMEKQLRLHQTPIIAAFHLKRFKTDGIAVQKIDKHVVFPLELDLQPYTISNENNNVPLKYDLYAVVVHNGFSSTSGHYFCFVRSASEIWHKLDDSMVTKVSGDCVLSQEAYLLFYARQGTPWFSSIMDSPNISPKSVLDMMANTEQGKAVESKEFSEQQVDYYCQETNIPVQVQPENNAILNGIAMVKGNSCRENVALDENKTCHEAVDDGFHPLTPTSSPSDAEKSFHISRDHLKKENRGSFKKPSNKFAGDSTRQEAAKYASKMMPDPRRDALLGLMGLPNEASSDKNRRITDSSQCKAGNPSSSKKSRQ* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01236 666 MobiDBLite consensus disorder prediction 650 666 - -
Rops1g01236 666 MobiDBLite consensus disorder prediction 589 666 - -
Rops1g01236 666 MobiDBLite consensus disorder prediction 1 20 - -
Rops1g01236 666 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 81 472 - -
Rops1g01236 666 Gene3D Cysteine proteinases 144 474 - -
Rops1g01236 666 FunFam Ubiquitin carboxyl-terminal hydrolase 20 229 475 - -
Rops1g01236 666 Pfam Ubiquitin carboxyl-terminal hydrolase 146 469 IPR001394 GO:0004843|GO:0016579
Rops1g01236 666 MobiDBLite consensus disorder prediction 1 34 - -
Rops1g01236 666 SUPERFAMILY Cysteine proteinases 144 471 IPR038765 -
Rops1g01236 666 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 146 161 IPR018200 GO:0004843|GO:0006511
Rops1g01236 666 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 414 432 IPR018200 GO:0004843|GO:0006511
Rops1g01236 666 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 145 472 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01236 Rops-Chr1 28423113 28426377 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01236 146 471 Miscellaneous Gene Families AT2G24640 35.015 8.19e-49 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01236 K11855 - gmx:100808015 547.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01236 1 28423113 28426377 Rops1g01236 1 28423113 28426377 ECH