Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01056 ATGTTGGACGGTCGTTCCTGTGTTGTTCCGAGGTTGTTTTCTTACACTTGCCAGGCAGAGAACGACTGGTCTTACATGAAGTACGTGTTGGATTTGGACATCAAAAATGGAAAGCGCCCTATGGAAGTTGATGCTGAGGATGAGCCCCAGCCAAGGAAGTGCACCAAGATATTGGATTCTTGCCATAGAGTTGAAACAACTCGAAATTTGATTCAACAGCAACCTTGTGAGGCTAAGGATTCTGTGATTCACCAAATGGATCAGGAGATCATTGAGCCACCAAGTAATCATCAAGGAGTTCAAGAAACTGAAGCTTGGAATGATCAGCAATTGGCTGAACAAGAAAAGCAGTTTGATGGCGATTCAATGGAATTTGGTGACCATCAATCTGATGAACAGAAGCAAAGTCACCCTGGGGGTTCATCAGCTTCTGGTGTTCATCCATCTGATGAGAAGCAGATGCAACATGCTGAGAATTCATTGAGTTCAAGTAACCAGCAATATGATGAGCAGCAACAGAACCATGGTGGGGATTCATCAGATTCTGGTTCTCTTTTACCACGCATGAACCGAGACAGCTCAATCACTTGTCTCAGCCGTTGTTCAAGGTCTGACTATGGTTCCCTTGCCTCACTGAACAAGAGCTTCCGGAACATAATCCGAAGTGGTGAGCTCTATAAATGGAGGAGACTAAATGGTATCATGGAACACTGGATTTATTTTTCATGTGCCCTCCTTGAATGGGAAGCCTATGATCCAATTCGCCAAAGGTGGATGCATTTACCAAGGATGGCTTCTAATGAATGCTTCATGTGTTCAGATAAGGAATCTTTAGCTGTAGGAACTGAACTTCTTGTGTTTGGGAGGGAGCTGAGATCCCATGTCATTTTCAGATACAGTCTTTTGACAAACTCATGGTCATCTGGAATGAGAATGAATGCTCCAAGATGCTTGTTTGGTTCAGCTAGCCTTGGAGAGATTGCAATATTAGCTGGTGGATGTGATTCAGAGGGACACATCCTTGACTCAGCTGAACTGTATAATTCTGAGACTCAAACATGGGAATTACTCCCAAGCATGAAAAAACCCAGGAAGATGTGCTCAGGGGTTTTCATGGATGGTAAATTTTATGTTATAGGGGGAATTGGGGGAAGTGATTCCAAGCTTCTTACTTGTGGAGAGGAGTACAATTTACAGTCTAGAACATGGACAGAAATTCCTAACATGTCCCCCGGACGTAGTAGTAGGGGGAATGAGATGCCTGCAACAGCTGAGGCACCACCTCTGGTTGCTGTTGTAGATAATCAATTGTATGCTGCTGATTATGCTGATATGGAGGTTAAAAAATATGACAAGGAAAGAAAATTGTGGCTTACCATTGGGAGGCTGCCGGAACGAGCAGTGTCGATGAATGGTTGGGGTCTTGCATTCAGGGCATGTGGAAATAGGCTTATTGTCATTGGTGGACCTAGGACTCATGGAGAAGGTTTTATTGAACTCAATTCATGGGTGCCAAGTGAGGGACCTCCACAATGGCATCTACTTGCTAGAAAACGTTCTGGTAACTTTGTTTATAACTGTGCTGTGATGGGATGCTGA 1599 0.4396 MLDGRSCVVPRLFSYTCQAENDWSYMKYVLDLDIKNGKRPMEVDAEDEPQPRKCTKILDSCHRVETTRNLIQQQPCEAKDSVIHQMDQEIIEPPSNHQGVQETEAWNDQQLAEQEKQFDGDSMEFGDHQSDEQKQSHPGGSSASGVHPSDEKQMQHAENSLSSSNQQYDEQQQNHGGDSSDSGSLLPRMNRDSSITCLSRCSRSDYGSLASLNKSFRNIIRSGELYKWRRLNGIMEHWIYFSCALLEWEAYDPIRQRWMHLPRMASNECFMCSDKESLAVGTELLVFGRELRSHVIFRYSLLTNSWSSGMRMNAPRCLFGSASLGEIAILAGGCDSEGHILDSAELYNSETQTWELLPSMKKPRKMCSGVFMDGKFYVIGGIGGSDSKLLTCGEEYNLQSRTWTEIPNMSPGRSSRGNEMPATAEAPPLVAVVDNQLYAADYADMEVKKYDKERKLWLTIGRLPERAVSMNGWGLAFRACGNRLIVIGGPRTHGEGFIELNSWVPSEGPPQWHLLARKRSGNFVYNCAVMGC* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01056 532 MobiDBLite consensus disorder prediction 120 187 - -
Rops1g01056 532 MobiDBLite consensus disorder prediction 120 134 - -
Rops1g01056 532 SUPERFAMILY Kelch motif 245 529 IPR015915 GO:0005515
Rops1g01056 532 Gene3D - 231 524 IPR015915 GO:0005515
Rops1g01056 532 Pfam Kelch motif 363 410 IPR006652 GO:0005515
Rops1g01056 532 Pfam Kelch motif 315 360 IPR006652 GO:0005515
Rops1g01056 532 SMART kelc_smart 327 374 IPR006652 GO:0005515
Rops1g01056 532 SMART kelc_smart 375 435 IPR006652 GO:0005515
Rops1g01056 532 SMART kelc_smart 283 326 IPR006652 GO:0005515
Rops1g01056 532 FunFam F-box/kelch-repeat protein SKIP11 231 517 - -
Rops1g01056 532 Coils Coil 154 174 - -
Rops1g01056 532 MobiDBLite consensus disorder prediction 135 187 - -
Rops1g01056 532 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 170 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01056 Rops-Chr1 24903216 24906189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01056 192 408 EF-hand Containing Proteins AT4G39560 25.806 3.72e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01056 - - gmx:100818865 899.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01056 1 24903216 24906189 Rops1g01056 1 24903216 24906189 ECH