Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01025 ATGTCCTCCTCCACCATTGCCACAGAACCTCTCTTCCACCTTTGCAGAAGAGAAACTCCAATTCACCGTTCCAAACCAAACCCATTATTCAGACCCTTCTTTCTCACTTGCTCTTCCAATCTCAATTTCAATAATGCTTCCTTCTTCACCTTCCGCCAATCCCATATGCCTCTTTCTCCTGCACTTTCAGCTTCCCTTACAGACACACCTTCCCCCCATTCTCTTCAATGCTCTGACACTTTCTTCTCCAACACTTTTCCAATCAACATAACCCAAATGGTGGATGGAAAGGTTTTTGTGAGGTTAGATCATGGGAAGAATTTGAGGGATTGGGAGCTTACAGTATGTTGCAATCTACCTGGAAAATGGATTCTTCACTGGGGAGTTACCCTTATTGATGATGTTGGAAGGGAATGGGATCAACCTCCTCGTGAAATGATGCCCCCTGGATCTGTTCCTATAAAGGATTATGCAATAGAGACACCCTTGAAGAATTCATCTTTATCTGCTGAAGGAGATATGTTTCATGAAATCAAGATTGATCTCAAATCCAAGAATAAAATTTCAGCAATTAATTTTGTTCTCAAGGATGAGGAAACTGGATCTTGGTATCAAAACAAAGGAAGAGATTTCACGGTTCCTTTGGTCAACTACATCGAGGCAGATACTGATACAATTGGACCTAAAAAAGGCTTTAATTTATGGCCAGGGAGTTTGGGGCAGATATCTAAAATTCTCCTCAAGCAAAAAGCGGGTGAAGATGACAGCAGTGAATCCACAGATCCAAAACAAGAAAATAATCAACTAGAAGGTTTCTATGAAGAAATCCCTATTACAAAGAATGTTCCAATCAATAACTCTATCAGTGTCTCCATTAAGAAATGCTCCGAGTCTGAGGCAGTTAAGAACCTTTTATATTTTGAAACGGATCTACCTGGAGATGTTGTCCTACATTGGGGGGTTTGCAGGGATGATTCAAGAAGGTGGGAAGTTCCACCTGCTCCTCATCCACCAGAAACAGTTCAATTTAAAGACAAAGCTTTGAGAACTCGATTACAGCCAAGAGACAGTGGAAAAGGATCTTCAGTACTAATCACTTTAGGAGAAGAATTTTCAGGATTTCTTTTTGTTGTTAAGCAAAATGAAAATACTTGGTTCAAGAACAAGGGAAATGACTTTTATATCCCCCTCTTAAGTTCTAGTAGCTTGCTTACTAATGGCATCAGGGAGGATCAGTCAGAAGGGGTGCAGAGGGAAGTGACTGAAGAAGCAAGTCAAGAGACTTCTTTCTTTGCATTTACTGATGGAATAACCACTGAAACAAGGGATTTGGTGGCAGACACTTCCTCTGAGAAGAGTCAAAAGAGAAAATCCAAAAAAGCACATGAAATTATTCTTCAAGAAATTGAAAGACTGGCTGCTGAAGCCTATAATTTCTTCAGAAGCGCCATTCCAACTTTCTCAGAGGCAGCTGTTGTGGAACCTGAGACAACTATTAGGGAACCTGAAGCTGCTGTGGAACCAGAGACACTAACTTTGGTTCCAAAAATAAGCCCAGGGATAGGCACAGGGTTTGAAATATTATGCCAAGGGTTTAACTGGGAATCTAATAAATCTGGAAGATGGTACACTGAGCTTAAACAGAAAGTTTCAGAACTAGCATCACTTGGTTTCACTGTGGTTTGGTTACCACCACCTACAGAGTCTGTTTCACCCGAAGGATACATGCCAAAGGATTTATATAATTTGAACTCAAGATATGGAAACACTGATGAACTGAAAGATTTGGTGAAACGATTTCATGAAGTTGGGATCAAAGCTCTAGGAGATGCTGTTTTAAATCACCGCTGTGCTCATTATCAGAATCAGAATGGTATTTGGAACATATTTGGAGGTCGTCTCAACTGGGATGATCGTGCAGTTGTTGCTGATGATCCACATTTTCAGGGTAGGGGCAACAAGAGTGGTGGAGATAATTTTCATGCTGCTCCAAACATTGATCATTCACAGGAATTTGTGAGAAAGGATCTTAAAGAGTGGTTATGCTGGTTGAGGAAAGAAATTGGGTATGATGGATGGAGGCTTGACTTTGTCAGAGGATTTTGGGGTGGTTATGTCAAGGACTACCTGGACGCAAGTGAACCTTACTTCGCAGTGGGAGAGTACTGGGATTCCCTCAGTTACACATATGGTGAAATGGATTATAATCAAGATGCTCATAGGCAGAGGATAGTTGACTGGATCAATGCCACCAATGGTACTGCTGGTGCATTTGATGTTACAACAAAAGGGATTCTTCACTCTGCATTGGAAAGATGTGAATATTGGCGGTTGTCAGATCAGAAGGGAAATCCCCCTGGCGTTATGGGTTGGTGGCCATCTCGTGCTGTTACCTTTATAGAGAATCATGACACTGGTTCCACCCAGGGTCATTGGAGATTTCCCAGTGGAAAAGAAATGCAAGGATATGCTTACATTCTTACTCACCCAGGAACCCCATCAGTGTTCTTTGACCACATTTTTTCTCACTACAGAACTGAAATAGCAACTCTTTTGTCTCTCAGGAAGAGGAACATGATCCACTGCAGGAGTACAGTTCAAATTGTTAAGGCAGAAAGGGATGTTTATGCTGCCATCATCGATGATAAAATTGCCATGAAGATTGGACCTGGACATTTTGAACCACCTTGTGGCTCTCACAAATGGTCCTTAGCTATTGAGGGAAGAGACTATAAGATTTGGGAATCATCATAA 2754 0.4139 MSSSTIATEPLFHLCRRETPIHRSKPNPLFRPFFLTCSSNLNFNNASFFTFRQSHMPLSPALSASLTDTPSPHSLQCSDTFFSNTFPINITQMVDGKVFVRLDHGKNLRDWELTVCCNLPGKWILHWGVTLIDDVGREWDQPPREMMPPGSVPIKDYAIETPLKNSSLSAEGDMFHEIKIDLKSKNKISAINFVLKDEETGSWYQNKGRDFTVPLVNYIEADTDTIGPKKGFNLWPGSLGQISKILLKQKAGEDDSSESTDPKQENNQLEGFYEEIPITKNVPINNSISVSIKKCSESEAVKNLLYFETDLPGDVVLHWGVCRDDSRRWEVPPAPHPPETVQFKDKALRTRLQPRDSGKGSSVLITLGEEFSGFLFVVKQNENTWFKNKGNDFYIPLLSSSSLLTNGIREDQSEGVQREVTEEASQETSFFAFTDGITTETRDLVADTSSEKSQKRKSKKAHEIILQEIERLAAEAYNFFRSAIPTFSEAAVVEPETTIREPEAAVEPETLTLVPKISPGIGTGFEILCQGFNWESNKSGRWYTELKQKVSELASLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGNTDELKDLVKRFHEVGIKALGDAVLNHRCAHYQNQNGIWNIFGGRLNWDDRAVVADDPHFQGRGNKSGGDNFHAAPNIDHSQEFVRKDLKEWLCWLRKEIGYDGWRLDFVRGFWGGYVKDYLDASEPYFAVGEYWDSLSYTYGEMDYNQDAHRQRIVDWINATNGTAGAFDVTTKGILHSALERCEYWRLSDQKGNPPGVMGWWPSRAVTFIENHDTGSTQGHWRFPSGKEMQGYAYILTHPGTPSVFFDHIFSHYRTEIATLLSLRKRNMIHCRSTVQIVKAERDVYAAIIDDKIAMKIGPGHFEPPCGSHKWSLAIEGRDYKIWESS* 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01025 917 Gene3D - 860 916 IPR013780 -
Rops1g01025 917 SMART alpha-amyl_c2 856 916 IPR012850 GO:0004556|GO:0005509|GO:0005975
Rops1g01025 917 MobiDBLite consensus disorder prediction 250 269 - -
Rops1g01025 917 CDD AmyAc_arch_bac_plant_AmyA 527 866 - -
Rops1g01025 917 PANTHER ALPHA-AMYLASE 495 915 - -
Rops1g01025 917 SUPERFAMILY (Trans)glycosidases 527 843 IPR017853 -
Rops1g01025 917 Pfam Alpha-amylase C-terminal beta-sheet domain 857 915 IPR012850 GO:0004556|GO:0005509|GO:0005975
Rops1g01025 917 Gene3D Glycosidases 526 859 - -
Rops1g01025 917 Pfam Alpha amylase, catalytic domain 548 808 IPR006047 GO:0005975
Rops1g01025 917 SMART aamy 526 863 IPR006047 GO:0005975
Rops1g01025 917 SUPERFAMILY Glycosyl hydrolase domain 860 915 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01025 Rops-Chr1 24069226 24078231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01025 4 917 Glycoside Hydrolase AT1G69830 62.975 0.0 1184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01025 K01176 - gmx:100810333 1459.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01025 1 24069226 24078231 Rops1g01025 1 24069226 24078231 ECH