Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00976 ATGGATTATCAACTGCTACAGATAGTTACATTGCTGACAGTGATAGCATTTGGAGGAGACAAAGAGAGAACTACAGAAGCATGCAGTTCAGATGACTTGGAAGGTTTGATGGGCTTCAAGAATGGAATTCAGATGGATACATCTGGTCGCTTGGCAAAGTGGGTTGGTAGAAACTGCTGTGAGTGGGAAGGAATTGTCTGTGAAAATGCAACCACCAGAGTGACACAGATCAATCTCCCAGGGCTCATTGATAAAGATTTATTTCAAACCCAGATGATGGGCCAGCTTTCTCCTTCCATAACACTCCTTTCCTCTCTTGAAATACTTGATCTTGGTGGTTTAGAAGGCCTCAGTGGAACAATTCCACAAACCATTGGTGTGCAAATTCCAAAGCTCCAAAAGCTCTACCTTCATGGCAACAATTTAACTGGTCCAGTACCAGAAAGCATTGGTGAGTTACCAAACCTCCAGGAACTGGCACTGCATGAAAATAAGTTATCTGGGTCGATCCCTCCTAGCCTTGGAAACTTAAAAAACCTCAAAAGTTTGCTGCTTTATTCAAATCAAATTTCAGGTACATTACCCCTCTCACTAGGGAATTTGACAAATTTGGTAGAATTGGATGTTCATGATAATGCTCTTAAGGGTCATATACCTAATGACATTGGTCAGATGCAGGCTCTAGAAAAGCTTGATCTTTCAAGCAATTTGCTAAGTGGAAGCATACCTTCTTCATTAACTAATTTAACTGCCATTTCTGTTTTGTATATGGACACCAACTATCTTGAGGGAACCATCCCATTTCCCTCAAGATCTGGTGAAATGCCTTCTCTGGCCTTCTTAAGACTCCATGATAACCATCTGAATGGAAATATACCTACCAGTTTTGGCTACCTGGTTTCTCTTCAAAGAGTTTCATTATCAAACAACAAACTTGAAGGAGCATTGCCTTCTAGTTTGGGCAATTTGCTTTCTTTGCAAGAGCTTTACCTCAGTGGCAACTCCTTGTCTGGCCAAATACCAAAATCAATAGGCCAGCTTTCTCAGCTCATAATGTTGAACATTTCCAACAATTTGATTGAAGGACCATTGCCTCAAGAGATGTCTTCCCTTAAAAATCTTCAAACTCTTGATCTTTCTTTCAACCCTCTAATTCTCTCTACCTTCCCTGAATGGTTAACACAACTGTCATCACTATCCCGCATTTACTTTGCAGGCTGTGGTATCATAGGCCAAATTCCAAACTTCTTGCAAACAATCCAGGAACTGGACTTATCAGTGAACCTTCTCACTGGAACCATACCAAATTGGATAGGATCACTGAGTCAACTCTCCTTGTTAAATCTCTCAAGGAATTCACTTGATTCACACATCCCTGATTCTGTTAAAAACTTGCAAGATCTAGGTGTTCTTGATCTTCACTCAAATAAGTTAACAGGCTCCATAACTGGAGCATTTGATATTGAACAAGGTATTTCTGGGGGATCACTAACATATATTGATCTTTCTGATAACAACTTCTCAAGTGGAGTTGAGGAAATTGGTGTAGGAGGGCAGCTTAATATTCAGTTTCTAAATGTGTCTCATAACCTTCTGAAAGGCACATTGCCAAGTTCCCTTGGGAGACTAAATTCCATTCACAGTTTGGATTTGAGTTTCAATGAGTTAGCCTCCAACTTGCCAGAGGTGCTGGCAAACTTGACCTTGTTGGAGAGACTGCAGCTGCAAAAGAATCATTTCAGTGGCAATATACCAAATGGATTTCTCAAACTGAGAAAGCTGAAGGAATTGAATTTATCAGACAATGTACTTGAAGGGGAAATTCCAGAGGGTAAACCACTAACTGACTTTCCTGATAGTTCATATTCTGGAAATAAAGGTTTGTGTGGGAAGCCTCTAAGTCCTTGTAAACTTTGA 1917 0.4027 MDYQLLQIVTLLTVIAFGGDKERTTEACSSDDLEGLMGFKNGIQMDTSGRLAKWVGRNCCEWEGIVCENATTRVTQINLPGLIDKDLFQTQMMGQLSPSITLLSSLEILDLGGLEGLSGTIPQTIGVQIPKLQKLYLHGNNLTGPVPESIGELPNLQELALHENKLSGSIPPSLGNLKNLKSLLLYSNQISGTLPLSLGNLTNLVELDVHDNALKGHIPNDIGQMQALEKLDLSSNLLSGSIPSSLTNLTAISVLYMDTNYLEGTIPFPSRSGEMPSLAFLRLHDNHLNGNIPTSFGYLVSLQRVSLSNNKLEGALPSSLGNLLSLQELYLSGNSLSGQIPKSIGQLSQLIMLNISNNLIEGPLPQEMSSLKNLQTLDLSFNPLILSTFPEWLTQLSSLSRIYFAGCGIIGQIPNFLQTIQELDLSVNLLTGTIPNWIGSLSQLSLLNLSRNSLDSHIPDSVKNLQDLGVLDLHSNKLTGSITGAFDIEQGISGGSLTYIDLSDNNFSSGVEEIGVGGQLNIQFLNVSHNLLKGTLPSSLGRLNSIHSLDLSFNELASNLPEVLANLTLLERLQLQKNHFSGNIPNGFLKLRKLKELNLSDNVLEGEIPEGKPLTDFPDSSYSGNKGLCGKPLSPCKL* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00976 638 SMART LRR_sd22_2 177 198 - -
Rops1g00976 638 SMART LRR_sd22_2 323 349 - -
Rops1g00976 638 SMART LRR_sd22_2 543 562 - -
Rops1g00976 638 SMART LRR_sd22_2 103 119 - -
Rops1g00976 638 SMART LRR_sd22_2 225 251 - -
Rops1g00976 638 SMART LRR_sd22_2 201 223 - -
Rops1g00976 638 SMART LRR_sd22_2 371 401 - -
Rops1g00976 638 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 363 638 - -
Rops1g00976 638 Pfam Leucine rich repeat 203 262 IPR001611 GO:0005515
Rops1g00976 638 Pfam Leucine rich repeat 420 478 IPR001611 GO:0005515
Rops1g00976 638 Pfam Leucine rich repeat 342 384 IPR001611 GO:0005515
Rops1g00976 638 Pfam Leucine rich repeat 130 190 IPR001611 GO:0005515
Rops1g00976 638 Pfam Leucine rich repeat 276 336 IPR001611 GO:0005515
Rops1g00976 638 ProSiteProfiles Leucine-rich repeat profile. 593 615 IPR001611 GO:0005515
Rops1g00976 638 FunFam Leucine-rich repeat receptor protein kinase EMS1 196 269 - -
Rops1g00976 638 SUPERFAMILY L domain-like 387 636 - -
Rops1g00976 638 PANTHER UNNAMED PRODUCT 85 509 - -
Rops1g00976 638 Gene3D Ribonuclease Inhibitor 353 638 IPR032675 -
Rops1g00976 638 Gene3D Ribonuclease Inhibitor 193 268 IPR032675 -
Rops1g00976 638 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
Rops1g00976 638 SUPERFAMILY L domain-like 57 410 - -
Rops1g00976 638 Gene3D Ribonuclease Inhibitor 29 192 IPR032675 -
Rops1g00976 638 PRINTS Leucine-rich repeat signature 228 241 - -
Rops1g00976 638 PRINTS Leucine-rich repeat signature 371 384 - -
Rops1g00976 638 SMART LRR_typ_2 299 322 IPR003591 -
Rops1g00976 638 SMART LRR_typ_2 129 152 IPR003591 -
Rops1g00976 638 SMART LRR_typ_2 153 176 IPR003591 -
Rops1g00976 638 SMART LRR_typ_2 465 488 IPR003591 -
Rops1g00976 638 SMART LRR_typ_2 543 566 IPR003591 -
Rops1g00976 638 SMART LRR_typ_2 225 249 IPR003591 -
Rops1g00976 638 SMART LRR_typ_2 591 624 IPR003591 -
Rops1g00976 638 SMART LRR_typ_2 275 298 IPR003591 -
Rops1g00976 638 SMART LRR_typ_2 441 464 IPR003591 -
Rops1g00976 638 SMART LRR_typ_2 323 347 IPR003591 -
Rops1g00976 638 SMART LRR_typ_2 201 224 IPR003591 -
Rops1g00976 638 SMART LRR_typ_2 177 200 IPR003591 -
Rops1g00976 638 SMART LRR_typ_2 371 396 IPR003591 -
Rops1g00976 638 FunFam Nuclear pore complex protein NUP107 29 195 - -
Rops1g00976 638 Gene3D Ribonuclease Inhibitor 270 351 IPR032675 -
Rops1g00976 638 FunFam LRR receptor-like serine/threonine-protein kinase 273 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00976 Rops-Chr1 23235415 23237525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00976 2 638 Receptor kinase-like Gene Family AT4G08850 32.801 1.32e-91 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00976 - - gmx:100799647 1014.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00976 1 23235415 23237525 Rops1g00976 1 23235415 23237525 ECH
Rops1g00976 1 23235415 23237525 Rops1g00976 1 23235415 23237525 PCT