Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00943 ATGGCCATCGCCGCTCACACTAAACTTATCCTCTCACTCCCACCACCTCTTTATCCTTCTTCTTCTTTCTCTCTCCGTCCCACCACTCTCTCTTTCTCACTCCTCCGCCATCGTTCCTTCAAATTCCCACTCTCCTTCTCCTTCAAGTCCCCAACCTTCCGCGCCTTCTCCGATGCCGAAGAAGAAGAAGAAGAAGAAGCAGACGAAGAAGAAGATGACGACGACGAAGAGGAATATGATGAAGACGACGACATTGCGGCAGATGAATACGACGACGTATCAGGTGATGTTTCCGAAGAAGGTGACGCCTTCGAGGTCGATTCGTTGGCTCGCCACGATGGATTCAAGTGGCAGAGAGTCGAGAAGCTCTGCAACGAAGTTAGAGAGTTCGGCGCCGAAATCATCGACGTCGATGAGCTTTCTTCCGTTTACGATTTCCGAATAGACAAGTTTCAGCGGCTTGCGATTCAAGCTTTTCTGAGAGGTTCGTCGGTGGTGGTTTCTGCTCCGACGAGTAGCGGGAAGACTTTGATCGCGGAAGCCGCGGCGGTGGCTACGGTGGCTAGGGGACGGCGAATATTCTACACGACTCCGCTTAAGGCATTATCCAATCAGAAGTTTCGTGAATTCCGGGAGACCTTTGGCGACAATTTTGTTGGCCTTCTTACAGGTGATACTGCCGTCAACAAGGATGCACAGGTTTTGATTATGACCACCGAGATATTGCGCAACATGTTGTATCAAAGTGTTGGTAATGTTTCTTCTGGAAGTGGACTTGTCCATGTTGATGTGATTGTTTTGGACGAAGTTCATTACCTTAGTGACATATCTCGTGGTACAGTTTGGGAAGAGATAGTTATTTATTGCCCAAAAGAAGTTCAACTTATTTGTCTGTCGGCAACCGTTGCAAATCCAGATGAGTTGGCTGGTTGGATTGGTCAGATTCATGGTAAAACAGAGTTGGTGACATCATCAAAACGCCCAGTTCCTCTGACTTGGCATTTCTCTATGAAGAATTCCTTATTACCTCTTCTTGATGAGAAAGGAACACGCATGAACAGGAAGCTGTCACTCAATTATTTACAACTTCAAGCTGCAGGAGCGAAACCTTACAAGGATGATTGGTCTAAAAAAAGGGATTCTGATGATTGGTCTAAAAAAAGGAATTCCCGGAAACGAGGAACTCGCATGAGCTATGACAGTGACGATAGCATGTTTGAACAACGTCCTCTTTCAAAGAATAACATAAATTCAATTCGTCGTTCACAAGTTCCTCAAATAATTGATACATTATGGCACCTTCAGTCTAGGGATATGCTGCCAGCTATTTGGTTTATCTTTAGCAGGAAGGGTTGTGATGCAGCTGTGCAATATCTTGAAGATTGCAAACTTTTAGATGAGTGTGAAACAAGTGAGGTTGAACTAGCCTTGAAGAGGTTCCGCATTCAGTATCCTGATGCTGTCAGAGAAACGGCTGTGAGAGGACTTTTGCAAGGGGTTGCTGCACATCATGCTGGATGTCTACCTTTGTGGAAGGCATTCATAGAAGAATTGTTTCAAAGAGGACTTGTCAAGGTTGTTTTTGCTACAGAGACCCTAGCTGCTGGAATCAATATGCCTGCTAGAACGGCTGTTATTTCATCCCTCAGCAAAAGAAGTGATAGTGGACGTACCCAATTAAGCTCAAATGAACTGCTTCAGATGGCTGGGCGTGCTGGACGCAGAGGCATTGATGAAAGTGGTCATGTAGTCCTCATCCAAACTCCTTATGAAGGTGCTGAAGAATGCTGCAAGGTACTGTTTGCTGGTCTTGAGCCTCTAGTGTCACAGTTTACTGCTTCATATGGAATGGTTTTGAATCTTCTTGCTGGTGCGAAAGCCATTCATAGGTCAAACGAATCAGATGAGATGAGACCTTCCTCAGGAAGAACTTTGGAAGAAGCTAGGAAGTTAGTTGAGCAAAGTTTTGGAAATTATGTGAGTAGCAGTGTTATGCTGGCTGCTAAAGAGGAACTTAATAAAATTGAAAAAGAAATTGAGTTGCTGATGTCAGAAATCACTGATGAAGCCATAGATAGAAAAAGCAGGAAGGCTTTATCACCACGACAATACAAGGAGATTGCAGAATTACAAGAAGATTTAAGGGCAGAAAAACGTGTTCGGTCTGAATTGCGGAAACAGATGGAAGCAAAGAGAATATCTGCACTGAAACCTTTCTTGGAAGAGCCCGAAAATGGACATTTACCATTTTTGTGCTTGCAGTATAGAGATTCTGAAGGAGTTCAACATTCAATTCCTGCAGTGTTTTTGGGGAAGGTTGACTCCCTTAATGCTTCAAAACTCAAAAACGTGATTTCTTCTGTCGATTCTTTTGCATTGAATTTAACAGATGCAGATGCAGATCCAAGTGTTACTGATTCTGAATCGAATGAAGATCTTGAACCATCATATCACGTGGCCCTTGGTTCAGATAACTCCTGGTATCTATTTACAGAAAAGTGGATTAAAACAGTATATGGGACGGGTTTTCCTGATGTTCCATTGGCTCCAGGGGATGCTCAACCTCGAGAAATTATGAGTGATCTTCTTGATAAGGAGGACATGAAGTGGGATAAGCTTGCTCACTCTGAACACGGTGGTTTATGGTACATGGAAGGATCTCTAGAGACATGGTCTTGGAGCCTGAATGTTCCTGTTTTTAGTAGCTTCTCTGAAAATGATGAGCTGCTTCTGAAGTCTCAAGCCTACAAAGATGCCATTGAAAAATACAAGGATCAAAGAAATAAAGTTTCACGCTTGAAGAAAAAGATATCTCGTACTGAAGGCTATAAAGAATATAATAAAATCATAGGCGCGGTCAAGTTTACCGAGGAGAAAATCAAGCGCCTGAAGACTAGATCTAAACGTTTGATTAATCGGATAGAACAAATTGAACCCTCAGGTTGGAAGGAGTTTATGCAGGTTAGCAATGTCATACATGAAACCAGAGCTTTAGATATTAATACACACGTCATATTTCCCCTTGGCGAAACTGCAGCTGCAATTCGAGGAGAAAATGAACTATGGCTTGCAATGGTTCTTCGCAATAAAATTTTACTAGATTTAAAACCTGCACAACTTGCTGCAGTGTGTGCAAGTTTGGTGTCCGAGGGTATCAAAATCAGACCCTGGAAAAATAACAATTATATTTATGAACCTTCTGCAACAGTAGTCAATTTCATAAGGTTATTGGATGAGCAAAGAAGTGCCTTGTTGACAATTCAGGAGAAACATGGGGTAACAATATCTTGCTGTTTGGATAGCCAATTTTCTGGTATGGTTGAAGCTTGGGCTTCTGGGTTGACATGGAGAGAAATAATGATGGATTGTGCAATGGATGATGGTGATTTAGCTCGTCTTCTTCGAAGGACCATTGATCTATTATCTCAGATTCCAAAATTAACAGATATTGATCCATTGTTGCAGCGCAATGCAAAGGCTGCTTCTGATGTCATGGACCGGCCTCCAATAAGTGAACTTGCTGGGTAG 3528 0.428 MAIAAHTKLILSLPPPLYPSSSFSLRPTTLSFSLLRHRSFKFPLSFSFKSPTFRAFSDAEEEEEEEADEEEDDDDEEEYDEDDDIAADEYDDVSGDVSEEGDAFEVDSLARHDGFKWQRVEKLCNEVREFGAEIIDVDELSSVYDFRIDKFQRLAIQAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARGRRIFYTTPLKALSNQKFREFRETFGDNFVGLLTGDTAVNKDAQVLIMTTEILRNMLYQSVGNVSSGSGLVHVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGQIHGKTELVTSSKRPVPLTWHFSMKNSLLPLLDEKGTRMNRKLSLNYLQLQAAGAKPYKDDWSKKRDSDDWSKKRNSRKRGTRMSYDSDDSMFEQRPLSKNNINSIRRSQVPQIIDTLWHLQSRDMLPAIWFIFSRKGCDAAVQYLEDCKLLDECETSEVELALKRFRIQYPDAVRETAVRGLLQGVAAHHAGCLPLWKAFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKRSDSGRTQLSSNELLQMAGRAGRRGIDESGHVVLIQTPYEGAEECCKVLFAGLEPLVSQFTASYGMVLNLLAGAKAIHRSNESDEMRPSSGRTLEEARKLVEQSFGNYVSSSVMLAAKEELNKIEKEIELLMSEITDEAIDRKSRKALSPRQYKEIAELQEDLRAEKRVRSELRKQMEAKRISALKPFLEEPENGHLPFLCLQYRDSEGVQHSIPAVFLGKVDSLNASKLKNVISSVDSFALNLTDADADPSVTDSESNEDLEPSYHVALGSDNSWYLFTEKWIKTVYGTGFPDVPLAPGDAQPREIMSDLLDKEDMKWDKLAHSEHGGLWYMEGSLETWSWSLNVPVFSSFSENDELLLKSQAYKDAIEKYKDQRNKVSRLKKKISRTEGYKEYNKIIGAVKFTEEKIKRLKTRSKRLINRIEQIEPSGWKEFMQVSNVIHETRALDINTHVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKIRPWKNNNYIYEPSATVVNFIRLLDEQRSALLTIQEKHGVTISCCLDSQFSGMVEAWASGLTWREIMMDCAMDDGDLARLLRRTIDLLSQIPKLTDIDPLLQRNAKAASDVMDRPPISELAG* 1176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00943 1175 Coils Coil 906 936 - -
Rops1g00943 1175 Gene3D - 956 1167 - -
Rops1g00943 1175 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 423 622 IPR001650 -
Rops1g00943 1175 Pfam DSHCT (NUC185) domain 1004 1170 IPR012961 -
Rops1g00943 1175 Coils Coil 53 73 - -
Rops1g00943 1175 Gene3D - 328 606 IPR027417 -
Rops1g00943 1175 MobiDBLite consensus disorder prediction 372 408 - -
Rops1g00943 1175 SMART helicmild6 490 576 IPR001650 -
Rops1g00943 1175 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 70 1168 - -
Rops1g00943 1175 FunFam DExH-box ATP-dependent RNA helicase DExH15 chloroplastic 957 1167 - -
Rops1g00943 1175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 589 IPR027417 -
Rops1g00943 1175 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 156 320 IPR014001 -
Rops1g00943 1175 Gene3D - 109 327 IPR027417 -
Rops1g00943 1175 SMART DSHCT_2 1000 1174 IPR012961 -
Rops1g00943 1175 Pfam DEAD/DEAH box helicase 151 303 IPR011545 GO:0003676|GO:0005524
Rops1g00943 1175 Coils Coil 707 727 - -
Rops1g00943 1175 MobiDBLite consensus disorder prediction 58 86 - -
Rops1g00943 1175 Coils Coil 665 692 - -
Rops1g00943 1175 SMART ultradead3 144 334 IPR014001 -
Rops1g00943 1175 CDD SF2_C_Ski2 420 588 - -
Rops1g00943 1175 MobiDBLite consensus disorder prediction 57 86 - -
Rops1g00943 1175 MobiDBLite consensus disorder prediction 372 407 - -
Rops1g00943 1175 Coils Coil 953 973 - -
Rops1g00943 1175 FunFam ATP-dependent RNA helicase 111 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00943 Rops-Chr1 22652120 22664645 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00943 K26077 - gmx:100780908 1880.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00943 1 22652120 22664645 Rops1g00943 1 22652120 22664645 ECH