Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00940 ATGATGGCTAAAATGAAAACCCATTTTCATTCTCTTCCTTTATTATTGTTCATCCTATCACTTTTTTTAGGCCAATGCAGACCCGACCCTGACCCAATTCAAGACTACTGCATTGCAGATAACAAAAACTCTTTTTTCATCAATGGGGTTCCTTGCATTAACCCAAACCAAGCTTCCTCATCCCATTTTGTAACATCTGCATTATCCAAGCCTGGCAACACTAGTAACATCTTTGGTTTCAGTGTCACCCCCACAAACACTGTTAACCTTCCTGGGCTTAACACCTTGGGCCTAGTACTTGTTCGGGTTGATATAGAAGCTAATGGGGTTGTGCCACCTCACTCTCATCCACGGGCCTCAGAAGTTACCATTTGCCTTCAGGGTCTGCTTCTTGTGGGCTTTGTTGACACATCTAACCGTGTATTTACCCAAAACTTGAAGCCTGGTGAGTCATTTGTGTTTCCAAGGGGCTTGGTGCATTTCTTATATAACTTTGACTCTAAGAAACCAGCACTGGCCTTATCTGGTCTCAATAGCCAGAATCCAGGTACACAAATAGCATCACGGGCAACATTTGCTAGCAAGCCTTCTTTTCCTGATGAAGTATTAAAGAGGGCATTCCAAATTAGTGGCCAAGAAGTGAAAATTATTCGTACAAACCTTGGAGGATGA 672 0.4271 MMAKMKTHFHSLPLLLFILSLFLGQCRPDPDPIQDYCIADNKNSFFINGVPCINPNQASSSHFVTSALSKPGNTSNIFGFSVTPTNTVNLPGLNTLGLVLVRVDIEANGVVPPHSHPRASEVTICLQGLLLVGFVDTSNRVFTQNLKPGESFVFPRGLVHFLYNFDSKKPALALSGLNSQNPGTQIASRATFASKPSFPDEVLKRAFQISGQEVKIIRTNLGG* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00940 223 Gene3D Jelly Rolls 28 223 IPR014710 -
Rops1g00940 223 FunFam germin-like protein subfamily 2 member 1 28 223 - -
Rops1g00940 223 Pfam Cupin 68 215 IPR006045 -
Rops1g00940 223 ProSitePatterns Germin family signature. 109 122 IPR019780 GO:0030145
Rops1g00940 223 CDD cupin_OxOx 29 221 IPR001929 GO:0030145
Rops1g00940 223 PRINTS Germin signature 144 164 IPR001929 GO:0030145
Rops1g00940 223 PRINTS Germin signature 114 134 IPR001929 GO:0030145
Rops1g00940 223 PRINTS Germin signature 178 193 IPR001929 GO:0030145
Rops1g00940 223 SMART Cupin_1_3 66 215 IPR006045 -
Rops1g00940 223 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 27 211 - -
Rops1g00940 223 SUPERFAMILY RmlC-like cupins 29 218 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00940 Rops-Chr1 22596433 22597264 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00940 29 222 Miscellaneous Gene Families AT5G39130 43.434 1.90e-52 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00940 - - lja:Lj2g3v1365980.1 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00940 1 22596433 22597264 Rops1g00940 1 22596433 22597264 ECH