Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00929 ATGAAGTTAAGAGCACAGAGAATCTTTCTATTCCTTTTGATATTATCTTTTCTACTTGTGGATGTCTCTGAATCCACTTATTTTACACCAGCAGTTGGATTAATAAACAGAGGCAAACAAATCCCTATGTTTCTTAGGAATATAGTTGCAAATAAATGGATTTCCACCTTCTGGAATAAGTTGAAGCCACTCTTCAACCGTCTAAAGATTGGACAATACGCCGAGGGGGTGTCCCAGTTGAAAGACTATTATGATCTCTTCGGTTACTTAAACTCTTCTTTACATTCAAACTTCACCGACGAATTCACTCCCGATCTTCAATCTGCTGTAATCGAGTTCCAGAAGAATTACAATCTGGAAGTTACAGGGCAGCTTGACCAAGATATTTATCAGATCATAGAACAGCCACGTTGTGGTGTTCCCGATATCATAAATGGCACCACAACCATGAACTCGGGGAAGGCGAACACGACGTCGTTTAAACCGTGGTGGAAAACTGGGGAGAAAGAACTCACCTATGCTCTTAACCCTGAGAACAACATCACGGACAGTGTGAAGTCTTTGTTCAAAGACGCATTCAACCGGTGGTCGAAGGTCACGTTGTTGAACTTCACAGAAACGACGTCGTTCCATGACTCGGACATCAAGATAGCGTTCGTGACGTTCGATGGAAAAGGTGGAACGGTGGGAGGTGCAGACTCGAACTATAGCATGCATGTCGGGAGCATATTTTTGGATTCGGAGGAGCAGTGGGTGGTGTCGAATGAGAACGTGACCGAAGAGGGTGACGTGGACTTGGAATCAGTGGTGATGCATCAGGTTGGTCATATACTAGGGTTGGGACATTCCTCTGTGGAAGAGGCAATTATGTATCCTATCGTGTTGGCAGAAAAGAAGACGGACTTGGCGAATGATGACTTGAAGAGGATTCAGCAAATATACGGTGTAAACTCAAATAACAACGGTTCGGCCCCTTCACATGGAAGGGCCAGTAGTGGCACCCTCGTTGGCTGTGGATGGCAGCGCAACCTAGTCCACACTTTCACAAGTGGATTTGCTTTCGTGGTTTTAGGTTTTTTCTGA 1083 0.4469 MKLRAQRIFLFLLILSFLLVDVSESTYFTPAVGLINRGKQIPMFLRNIVANKWISTFWNKLKPLFNRLKIGQYAEGVSQLKDYYDLFGYLNSSLHSNFTDEFTPDLQSAVIEFQKNYNLEVTGQLDQDIYQIIEQPRCGVPDIINGTTTMNSGKANTTSFKPWWKTGEKELTYALNPENNITDSVKSLFKDAFNRWSKVTLLNFTETTSFHDSDIKIAFVTFDGKGGTVGGADSNYSMHVGSIFLDSEEQWVVSNENVTEEGDVDLESVVMHQVGHILGLGHSSVEEAIMYPIVLAEKKTDLANDDLKRIQQIYGVNSNNNGSAPSHGRASSGTLVGCGWQRNLVHTFTSGFAFVVLGFF* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00929 360 Gene3D Collagenase (Catalytic Domain) 69 322 IPR024079 GO:0008237
Rops1g00929 360 Pfam Matrixin 167 315 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Rops1g00929 360 SUPERFAMILY PGBD-like 68 143 IPR036365 -
Rops1g00929 360 PRINTS Matrixin signature 189 204 IPR021190 GO:0004222|GO:0006508|GO:0008270
Rops1g00929 360 PRINTS Matrixin signature 133 146 IPR021190 GO:0004222|GO:0006508|GO:0008270
Rops1g00929 360 PRINTS Matrixin signature 302 315 IPR021190 GO:0004222|GO:0006508|GO:0008270
Rops1g00929 360 PRINTS Matrixin signature 269 294 IPR021190 GO:0004222|GO:0006508|GO:0008270
Rops1g00929 360 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 163 319 - -
Rops1g00929 360 SMART col_5 160 316 IPR006026 GO:0006508|GO:0008237|GO:0008270
Rops1g00929 360 Pfam Putative peptidoglycan binding domain 75 132 IPR002477 -
Rops1g00929 360 PANTHER MATRIX METALLOPROTEINASE 57 317 - -
Rops1g00929 360 ProSitePatterns Matrixins cysteine switch. 136 143 IPR021158 GO:0004222|GO:0006508|GO:0008270|GO:0031012
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00929 Rops-Chr1 22297400 22299605 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00929 - - gmx:100782021 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00929 1 22297400 22299605 Rops1g00929 1 22297400 22299605 ECH