Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00925 ATGGGACTTCTTCAATGTCCCTTATATTGCCACTCACAGGAACAACAATCACAAGCTCACTCTCATCACCTTCACTCAGAATCATCAACCTCTTCCTCCCTCTCTTCACAGCCAAGTCTACCTTCTGTTCCTTCACTCACCCCATCTTCTCAATACCCTGAACAACCCCAAACCACCCACCACCAACTCTTAACCACCATCAAAGGCCACTCCTCTCCTATCTCTTCCCTTGTTCTCCATGGCAAGTTCCTCTATAGTGGCTCTTCAAACAGTGAAATAAGAAGATGTAGCAGAGACCCTTTTGCTCTTCAAAGCTCAAACAACACCAACAACGTTGTAGCTATCAGCAATGGTGCCATCAAGACCATGATCGTTTTGAATGATATGCTATTCAGTGCTCACCAAGACCACAAAATCCGCGTTTGGAAAATCGAAACAAGTAATCCAAACCAAAGATACAAATGCATAGCCACCCTTCCCACTTTCAATGACCGTTTTTCCAAGCTGTTTTCCTCAAAGAACTACGTTGAAATTCGGCGACACAAGAAGTGTACATGGGTGCATCACGTTGACACTGTTTCTGCTCTTGTTCTTTCCAAGGATGGTTCCCTCCTTTACTCAGCTTCATGGGACAGAACATTCAAAATTTGGAGAACCACTGATTTCAAGTGCTTAGAGTCTGTTAAAAATGCACACGAGGATGCAATCAATGCCTTGGTTGTGTCTCCTGATGAGTTTGTTTACACAGGTTCTGCTGATAAGAAAATCAAGATATGGAAGAAGCATGCAGGTGAGAAAAAGCATTCCTTATTGGGAACCTTGGAGAAGCATAAATCTGCTGTGAATGCCCTGTCTCTTAATGAAGATGGGTCTGTATTGTATTCAGGTGCATGTGACAGGTCAATTTTAGTGTGGGAGAGTAATAACAGTGGTGATGGAAATATGGTGCTGGTGGGTGCTCTTAGAGGGCACACAAAGGCTATCTTGTGTTTGGTGACTGTGGCAGATTTGGTATTTAGTGGATCAGCTGATAACACTGTTAGGATATGGAGGAGAGGGTTTGAGAAGAGCTATACATGCTTGGCTGTGTTACAAAGTCATAGAAAACCTGTGAAGTGTTTGGCTGTGACAGCTGACTCCAACAATACCAAAAATGGTGGTCCTGATGATGATGATAATACTAGTTCTTATCTTCTCTGCAGTGGTAGTTTGGATTGTGACATTAAAGTTTGGCAAATACGCGTTCCCTTGTTTTGA 1257 0.4296 MGLLQCPLYCHSQEQQSQAHSHHLHSESSTSSSLSSQPSLPSVPSLTPSSQYPEQPQTTHHQLLTTIKGHSSPISSLVLHGKFLYSGSSNSEIRRCSRDPFALQSSNNTNNVVAISNGAIKTMIVLNDMLFSAHQDHKIRVWKIETSNPNQRYKCIATLPTFNDRFSKLFSSKNYVEIRRHKKCTWVHHVDTVSALVLSKDGSLLYSASWDRTFKIWRTTDFKCLESVKNAHEDAINALVVSPDEFVYTGSADKKIKIWKKHAGEKKHSLLGTLEKHKSAVNALSLNEDGSVLYSGACDRSILVWESNNSGDGNMVLVGALRGHTKAILCLVTVADLVFSGSADNTVRIWRRGFEKSYTCLAVLQSHRKPVKCLAVTADSNNTKNGGPDDDDNTSSYLLCSGSLDCDIKVWQIRVPLF* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00925 418 CDD WD40 63 412 - -
Rops1g00925 418 SMART WD40_4 357 412 IPR001680 GO:0005515
Rops1g00925 418 SMART WD40_4 221 260 IPR001680 GO:0005515
Rops1g00925 418 SMART WD40_4 109 143 IPR001680 GO:0005515
Rops1g00925 418 SMART WD40_4 314 351 IPR001680 GO:0005515
Rops1g00925 418 SMART WD40_4 179 218 IPR001680 GO:0005515
Rops1g00925 418 SMART WD40_4 267 306 IPR001680 GO:0005515
Rops1g00925 418 SMART WD40_4 60 97 IPR001680 GO:0005515
Rops1g00925 418 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 227 IPR001680 GO:0005515
Rops1g00925 418 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 321 350 - -
Rops1g00925 418 Gene3D - 56 164 IPR015943 GO:0005515
Rops1g00925 418 Gene3D - 165 416 IPR015943 GO:0005515
Rops1g00925 418 SUPERFAMILY WD40 repeat-like 59 413 IPR036322 GO:0005515
Rops1g00925 418 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 186 217 - -
Rops1g00925 418 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 274 306 - -
Rops1g00925 418 PRINTS G protein beta WD-40 repeat signature 247 261 IPR020472 -
Rops1g00925 418 PRINTS G protein beta WD-40 repeat signature 399 413 IPR020472 -
Rops1g00925 418 PRINTS G protein beta WD-40 repeat signature 338 352 IPR020472 -
Rops1g00925 418 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 229 260 - -
Rops1g00925 418 MobiDBLite consensus disorder prediction 17 59 - -
Rops1g00925 418 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 18 414 IPR045182 -
Rops1g00925 418 Pfam WD domain, G-beta repeat 359 411 IPR001680 GO:0005515
Rops1g00925 418 Pfam WD domain, G-beta repeat 270 305 IPR001680 GO:0005515
Rops1g00925 418 Pfam WD domain, G-beta repeat 223 260 IPR001680 GO:0005515
Rops1g00925 418 Pfam WD domain, G-beta repeat 318 350 IPR001680 GO:0005515
Rops1g00925 418 Pfam WD domain, G-beta repeat 187 217 IPR001680 GO:0005515
Rops1g00925 418 ProSiteProfiles Trp-Asp (WD) repeats profile. 274 306 IPR001680 GO:0005515
Rops1g00925 418 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 269 IPR001680 GO:0005515
Rops1g00925 418 ProSiteProfiles Trp-Asp (WD) repeats profile. 321 350 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00925 Rops-Chr1 22203967 22205420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00925 231 413 Miscellaneous Gene Families AT5G08390 22.066 1.90e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00925 - - cam:101511687 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00925 1 22203967 22205420 Rops1g00925 1 22203967 22205420 ECH