Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00922 ATGTCCGATAGTTCGAGGGGTCGAGTTACCATTACTCTTGGGCGTAGTGGTCAGGTTGTGAAGCGGGGTATATCTGCTGCGGATGCTTCTTTCTCTTCTTCTATTCCCTCAGGTGGGACCAAGCGGTCTGTAAGAGACAGAATTGGAAATAATGCAGATAGTTCCATGTGGCATGGAAACGGACTCAGCAGCAATAAACGCCAACGAGGACATATAAGCGTACAAAATGGACTGGATGGTAATGGGCGTATTGGCAAAGACGATCTCCGATTGAAACTCTTGCAGAAAAATGCATCTAGGCAGGCTGAGAGCAATGGCAATAAGAGGCATGTGGACCTCCGTGAAAAATTGTCAAAGCCCGTTCACCCTATGACAAACAGTTTTAATTCAAAGCAGCGTGTGCCTGAACCAAGGGAAACAAGCTTGTTGAGGCAAATTCCCTCAGCTAGAAGTTCTGATGATTTAATGCGTATGGAATCCATGAGAAGCTCATACTCTCCTTGGACACTGGATCATATTCGGCAAAGATCACCAGATGGGTTTCCAAGTACTTCCAGGGTGATTTCCCCCCTAAGAAATGTCGGAGACCTACCGAGAAGGCCATTAAACAGGACATATGATGGTGTTAGATCAGTTCCATATGTAGCTAGGGATGTTCTAGAAACTTCAAGGCCTCCAAGTACTGCACCTTCGTCTTTCATGTCACGCTCCACGATATCCACATTGCCTCCAGTAACTACTAAGCCTGTAGCATCTCATCCTGGCCAACGTCCTCCATCTAGCAGTGTTGCACAAAGGGCTTCATATGTGGGTGATGAACAGCAATCACACCAAACTGTTGATGGCCTGTTACATGCACTGGGACTAGGAAAATATGCCATTCTCTTCAAGGCTGAGGAAGTGGATATGACTGCATTGAAGCAGATGGGAGAAAATGACCTCAAAGAACTTGGAATTCCTATGGGTCCAAGGAAAAAAATTCTTCTCGCTGTCTTGCCTCGTACCAAACGTCAACAATGA 1020 0.4598 MSDSSRGRVTITLGRSGQVVKRGISAADASFSSSIPSGGTKRSVRDRIGNNADSSMWHGNGLSSNKRQRGHISVQNGLDGNGRIGKDDLRLKLLQKNASRQAESNGNKRHVDLREKLSKPVHPMTNSFNSKQRVPEPRETSLLRQIPSARSSDDLMRMESMRSSYSPWTLDHIRQRSPDGFPSTSRVISPLRNVGDLPRRPLNRTYDGVRSVPYVARDVLETSRPPSTAPSSFMSRSTISTLPPVTTKPVASHPGQRPPSSSVAQRASYVGDEQQSHQTVDGLLHALGLGKYAILFKAEEVDMTALKQMGENDLKELGIPMGPRKKILLAVLPRTKRQQ* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00922 339 MobiDBLite consensus disorder prediction 49 75 - -
Rops1g00922 339 Gene3D - 270 339 IPR013761 -
Rops1g00922 339 PANTHER SCP160 9 335 - -
Rops1g00922 339 MobiDBLite consensus disorder prediction 122 136 - -
Rops1g00922 339 Pfam SAM domain (Sterile alpha motif) 274 331 IPR001660 GO:0005515
Rops1g00922 339 FunFam DDHD domain-containing 2 278 339 - -
Rops1g00922 339 MobiDBLite consensus disorder prediction 224 274 - -
Rops1g00922 339 MobiDBLite consensus disorder prediction 26 84 - -
Rops1g00922 339 MobiDBLite consensus disorder prediction 221 274 - -
Rops1g00922 339 ProSiteProfiles SAM domain profile. 275 338 IPR001660 GO:0005515
Rops1g00922 339 SUPERFAMILY SAM/Pointed domain 276 332 IPR013761 -
Rops1g00922 339 MobiDBLite consensus disorder prediction 121 141 - -
Rops1g00922 339 SMART SAM_4 272 337 IPR001660 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00922 Rops-Chr1 22126395 22134321 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00922 246 331 Glycosyltransferase AT3G07170 47.674 2.77e-17 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00922 - - gmx:100797199 526.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00922 1 22126395 22134321 Rops1g00922 1 22126395 22134321 ECH