Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00877 ATGGTTGCTCACGCGAAGGACGAGGCGTACCTAAACGCGGCGATTCCGAAGCGAATCCGGTTGTTCGAGGCGATTCAGGCGGAGCAGAAGACTCTTCGGCTGTCACTCTCGCCGGATCCGATTAAGGTCACACTTCCCAACGGCAACGTGAAGGAAGGAAAGAAGTGGCAAACCACTCCTCTGGATATAGCTCGCGAAATCTCGAAAAATTTGGCTTCCAATGCACTCATCGCGAGGGTCAATGGTGTTCTTTGGGACATGACACGGCCATTAGAAGAGGATTGTGAGCTTCAGATCTTTAAGTTTGATGATGATGAAGGACGTGACACTTTCTGGCACTCCAGTGCTCACATTCTCGGCCAGTCACTTGAGGTGGAGTATGGATGCAAGCTCTGCATTGGACCTTGCACTACCAGAGGAGAGGGATTCTATTATGATGCGTTTTACGGTGATTTGGGTTTGAATGATGATCACTTTAAACAAATTGAGGCTGGAGCATTGAAAGCTGCTGCGGAAAAACAACCCTTTGAGCGCATTGAAGTTACACGTGATCAGGCACTTGAAATGTTTTCGGATAATAAGTTTAAGGTCGAAATTATCAATGATTTGCCAGCTGACAAGACTATCACGGTATACCGATGTGGTCCCCTAGTTGATTTGTGTCGGGGACCACATATACCTAATACATCCTTTGTCAAAGCAATTGCATGTCTAAAGGCTTCATCAGCATATTGGAGGGGGGACAAAGATCGGGAAAGCTTACAAAGAGTTTATGGCATATCTTATCCTGATCAGAAGAGTTTAAAGGAATATTTGCTTCGGCTGGAGGAGGCTAAAAAGTATGATCATAGGATTTTGGGTGTGAAACAGGAGCTTATCCTTCATCATGAATGGAGCCCAGGAAGCTGGTTTTTTCTTCCACATGGTACTCGGATCTACAACAAACTCACGGAGTTCATTCGAAATCAGTACAGAGACAGGGGCTATCAAGAGGTCATATCCCCAAATGTATTTAACATGGATCTGTGGGTGCAATCTGGTCATGCTGCAAATTATAGAGAGGATATGTTTATCTTAGAGATTGACAAACAAGAGTTTGGCTTGAAACCAATGAATTGCCCAGGGCACTGCTTGATGTATAAACACAGGGTTCGATCATATAGAGAACTTCCTCTACGTCTTGCTGATTTTGGGGTTTTGCATCGGAACGAGGCTAGTGGTGCCCTGAGTGGATTAACACGTGTTAGGAGATTTCAGCAGGATGATGCACATATTTTCTGCAGGGAGTCCCAGATAAAGGATGAAGTCAGAAATGGCTTGAATTTCATCAATTATGTTTATGAAATATTTGGTTTCACATATGAGCTGAAACTTTCAACGAGGCCAGAGAAGTATCTAGGAAACGTGGAAACATGGGAGAAGGCTGAAAATGCTCTAAAAGAAGCTTTGGATGAGTTTGGCAAGCCTTGGCAGTTGAATGAAGGGGATGGTGCATTCTATGGACCAAAGATAGATATCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTTTGCAGCTTGACTTCCAGCTTCCTGATCGTTTCAAGTTGGAATACTCAGCTGAGGATGAAGCCAAAATTGAGAGACCTGTTATGATACACCGAGCCATTTTAGGGTCTGTTGAGCGCATGTTTGCCATACTTTTAGAACACTACAAGGGTAAATGGCCCTTCTGGCTGAGCCCTCGTCAAGCAATTGTATGCCCTGTGTCAGAGAAATCACAAGCTTATGCACTGCAGGTGCGAGAACAGATTCACCAAGCAGGGTATCATGTTGATGCTGATACAACTGATAGGAAGATTCAGAAGAAGGTACGAGAAGCTCAGTTAGCACAGTACAACTACATCTTGGTTGTTGGAGAGGAGGAAGCTAATACAGGACAGGTGAGTGTACGAGTTAGAGATAAGGCAGACCATAAGGTTATGAGTATTGAGAACCTACTCAAACACTTCAGAGACGAAGTTGCAGCTTTCCATTGA 2028 0.4428 MVAHAKDEAYLNAAIPKRIRLFEAIQAEQKTLRLSLSPDPIKVTLPNGNVKEGKKWQTTPLDIAREISKNLASNALIARVNGVLWDMTRPLEEDCELQIFKFDDDEGRDTFWHSSAHILGQSLEVEYGCKLCIGPCTTRGEGFYYDAFYGDLGLNDDHFKQIEAGALKAAAEKQPFERIEVTRDQALEMFSDNKFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKAIACLKASSAYWRGDKDRESLQRVYGISYPDQKSLKEYLLRLEEAKKYDHRILGVKQELILHHEWSPGSWFFLPHGTRIYNKLTEFIRNQYRDRGYQEVISPNVFNMDLWVQSGHAANYREDMFILEIDKQEFGLKPMNCPGHCLMYKHRVRSYRELPLRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCRESQIKDEVRNGLNFINYVYEIFGFTYELKLSTRPEKYLGNVETWEKAENALKEALDEFGKPWQLNEGDGAFYGPKIDISVSDALSRKFQCATLQLDFQLPDRFKLEYSAEDEAKIERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQAYALQVREQIHQAGYHVDADTTDRKIQKKVREAQLAQYNYILVVGEEEANTGQVSVRVRDKADHKVMSIENLLKHFRDEVAAFH* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00877 675 SUPERFAMILY Class II aaRS ABD-related 566 671 - -
Rops1g00877 675 CDD TGS_ThrRS 41 106 - -
Rops1g00877 675 CDD ThrRS_core 282 578 IPR033728 -
Rops1g00877 675 CDD ThrRS_anticodon 578 668 IPR047246 -
Rops1g00877 675 Gene3D - 571 674 IPR036621 -
Rops1g00877 675 ProSiteProfiles TGS domain profile. 39 101 IPR004095 -
Rops1g00877 675 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 362 568 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Rops1g00877 675 SUPERFAMILY ThrRS/AlaRS common domain 103 280 IPR018163 GO:0000166
Rops1g00877 675 NCBIfam threonine--tRNA ligase 112 670 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Rops1g00877 675 Hamap Threonine--tRNA ligase [thrS]. 106 673 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Rops1g00877 675 Gene3D - 104 261 - -
Rops1g00877 675 FunFam Threonyl-tRNA synthetase, mitochondrial 105 262 - -
Rops1g00877 675 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 307 573 IPR006195 -
Rops1g00877 675 SMART tRNA_SAD_4 209 258 IPR012947 GO:0004812|GO:0005524|GO:0043039
Rops1g00877 675 FunFam Probable threonine--tRNA ligase, cytoplasmic 397 571 - -
Rops1g00877 675 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 209 258 IPR012947 GO:0004812|GO:0005524|GO:0043039
Rops1g00877 675 FunFam Threonine--tRNA ligase mitochondrial 1 262 390 - -
Rops1g00877 675 Gene3D Bira Bifunctional Protein; Domain 2 262 570 IPR045864 -
Rops1g00877 675 Pfam Anticodon binding domain 580 669 IPR004154 -
Rops1g00877 675 SUPERFAMILY Class II aaRS and biotin synthetases 282 565 IPR045864 -
Rops1g00877 675 Gene3D - 39 100 IPR012675 -
Rops1g00877 675 FunFam Threonine--tRNA ligase, cytoplasmic 39 100 - -
Rops1g00877 675 Pfam TGS domain 41 101 IPR004095 -
Rops1g00877 675 FunFam Threonine--tRNA ligase mitochondrial 1 572 675 - -
Rops1g00877 675 PRINTS Threonyl-tRNA synthetase signature 401 424 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Rops1g00877 675 PRINTS Threonyl-tRNA synthetase signature 368 396 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Rops1g00877 675 PRINTS Threonyl-tRNA synthetase signature 502 530 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Rops1g00877 675 PRINTS Threonyl-tRNA synthetase signature 573 585 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Rops1g00877 675 PRINTS Threonyl-tRNA synthetase signature 546 559 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Rops1g00877 675 PANTHER THREONINE-TRNA LIGASE 10 674 - -
Rops1g00877 675 SUPERFAMILY TGS-like 41 101 IPR012676 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00877 Rops-Chr1 21211101 21225281 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00877 K01868 - gmx:100812652 1311.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00877 1 21211101 21225281 Rops1g00877 1 21211101 21225281 ECH