Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00870 ATGGCCGCACCTGCAGAGAACGTAGTTGTTGAGTCCACAGATTTTCCAGTTAAGAGGCAAAGGGAAGATGGAGAAAATGGTGTCTCTGAGATTGTTTCTACGATCTCAACGGACCCTCAACATCAGGGTATCTCAGCTGTTATTCCTGGCTGGTTCTCTGAAATTAGTCCAATGTGGCCTGGGGAAGCACACTCCTTGAAGGTGGAAAAGATTTTGTTTCAAGAAAAGTCTGATTATCAGAATGTCATGGTTTTCCAGTCATCGACATATGGCAAGGTTCTTGTTTTGGATGGAGTCATTCAGCTCACAGAAAGGGATGAGTGTGCCTACCAAGAGATGATCACTCATCTTCCTCTTTGCTCTATTCCAAATCCCAAAAAGGTTTTGGTTATTGGTGGAGGAGATGGTGGAGTCCTGCGGGAAGTATCACGCCATTCTTCGGTAGAAAAGATAGACATTTGTGAAATAGACAAGATGGTTGTTGATGTCTCCAAACAATTTTTCCCCGATATAGCAGTAGGTTTTGAGGACCCACGCGTGAATCTACATGTCGGTGATGGAGTTGCATTTTTGAAGGCAGTTCCAGAAGGAACTTATGATGCAGTTATAGTGGATTCATCCGACCCTATTGGACCTGCGCAAGAGCTTTTTAAAAAGCCTTTCTTTGAGTCAGTTGCAAAGGCGCTTCGTCCCGGTGGAGTTTTGTGCACTCAAGCAGAAAGTATATGGCTTCATATGCATATCATTGAGGACATTGTTGCAAATTGTCGCCAGATATTCAAAGGTTCTGTCAACTACGCCTGGACCACAGTTCCTACATACCCAAGTGGGATGATTGGTTTTATGCTTTGCTCAACTGAGGGTCCTCCTGTTGATTTCAAGCATCCAGTGAATCCTATAGATGAGAATGAAAATCAGCAGTCAGCAAGACCATTGAAATTTTACAACTCTGAGATTCACACAGCATCTTTCTGTTTACCATCTTTTGCTAAGAGGGCGATTGCATCTAAAGCAAACTGA 1020 0.4333 MAAPAENVVVESTDFPVKRQREDGENGVSEIVSTISTDPQHQGISAVIPGWFSEISPMWPGEAHSLKVEKILFQEKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDIAVGFEDPRVNLHVGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFKKPFFESVAKALRPGGVLCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPPVDFKHPVNPIDENENQQSARPLKFYNSEIHTASFCLPSFAKRAIASKAN* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00870 339 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 128 141 IPR030373 -
Rops1g00870 339 Gene3D Vaccinia Virus protein VP39 104 339 IPR029063 -
Rops1g00870 339 PIRSF Spermidine_synth 39 339 IPR030668 GO:0006595
Rops1g00870 339 Pfam Spermidine synthase tetramerisation domain 50 104 IPR035246 -
Rops1g00870 339 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 47 334 IPR029063 -
Rops1g00870 339 FunFam Spermidine synthase 1 102 339 - -
Rops1g00870 339 NCBIfam spermidine synthase 51 329 IPR001045 GO:0003824
Rops1g00870 339 Hamap Polyamine aminopropyltransferase [speE]. 50 335 IPR001045 GO:0003824
Rops1g00870 339 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 49 286 IPR030374 -
Rops1g00870 339 Pfam Spermine/spermidine synthase domain 107 294 - -
Rops1g00870 339 PANTHER SPERMIDINE/SPERMINE SYNTHASE 41 336 IPR001045 GO:0003824
Rops1g00870 339 FunFam Spermidine synthase 1 42 101 - -
Rops1g00870 339 CDD AdoMet_MTases 127 238 - -
Rops1g00870 339 Gene3D Spermidine synthase, tetramerisation domain 32 103 IPR037163 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00870 Rops-Chr1 21046784 21050385 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00870 K00797 - gmx:100790506 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00870 1 21046784 21050385 Rops1g00870 1 21046784 21050385 ECH
Rops1g00870 1 21046784 21050385 Rops2g02729 2 46181093 46185304 PCT