Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00866 ATGGCGGATTCCGCCTCTTCTCCCGCAACCCTAGAACCCAACCCCAAACCCTCCGAATCCGGTGCTCCGAATTCCCACCCCAACCAACCCGATCCAATTCCCCAATCAACCCAATTGCAATCCTCAACACCTTCTTCTACACCGAACCCTAATTCCAATCCACCGTTAGCGTCTACACTGTCGCTGCCTCCACCGCCGTCTCTACTCTATGCGCCGCCGCAAGTCCCCGGCGTCCTCCCTCCGTCGACGCCGTCGTTCCGGCCGCTAGCTCCTCAAGTGCCGCAGTTCTCTCCTTTACCCAATCCCGCCGGTGCATACCAAAACCCTACCGTTCCTCCTCCCGGCGTGGCCAGCGCCGCCGTGCCGCAGATGCAACCGATGATGTCGTATCAGGTTCCCACCGTTCCGGCGACTAACCCTGCCTTGCGACCCTTTGCACCGATCCCAAATGGTTACGCCGCGCCTCCACAAGGAACCGTTACTCCTGCAGGCATTCCTCGTTACCCCCCTCCGTATGGAACTATGGTTCGTCCTGTATATCCTCCACGCCCTCCCGGATTAGTTAATGTACTTCCAGTATCACGTCCACCTGTTGCAGGGATCCCTCCAGTTCGCCCTATTATTCCTCCTGTTGTCAGACCTGTGGTTGCTCCTAGTGTTACTCAAGCTGAGAAGCCACAAACCACAGTTTACATTGGCAAGATTGCACCGACTGTGGAAAATGAGTTCATGCTTTCTCTCCTTCAATTATGTGGAAATATCAAGAGCTGGAAACGTCCTCAAGATTTATCAAGTGGAACTCCTAAAAGTTTTGGGTTTTATGAGTTTGAGACTGCTGAAGGGGTTCTCCGTGCTATGCGTCTCCTTACTAAATTGAATATTGATGGGCAAGAACTAATGATCAACATCAATGAAGCTATGAAAGAATATTTGGAGCGGTATGTTCAAAGGAAAACTGAGAACTCAGAGAAAAAGGAATCTCAGGCAGCAGGAGTTGAAAAAGATGATGAAGGTGCAAAATCTTCTGATGCAAATGAGGTTGCAAAGCCCGATGGAGACCTCTTGAATAAGGAGGATAATGATTCAGGGAACAAGAAATCCCATGATGTGGCAAACTTTGGGATTGTCACAGATGAAGATAAGGAAGCTGATCGAGATGCTTTAGAAAAGATCACTAAGATGATAGAGGAGAGGTTGAAAACAAGACCTTTGCCTCCACCACCTGCACAGCCAACTGGCAATGGTTCTGTGAATTTAACTTCAGAACAACCTGCTAAAACAAGAGATGGAGACTCTGATGTGGATACAAAGAAGAGTGAAACAGCTGAGGATAAAAGTGAGAAAGAGACAAACAGTGATAACAAACTAACCAGTGAACATGATAAACCCGAAACCCCTGATAGAAGGCATGATAGGAAAAGCAGAGAGAGGGACCGAGATAGGGAACTAAAACGAGAAAAGGAAAGAGAACTTGAAAGATATGAGAGAGAAGCTGAACGGGAACGTATTCGAAAAGAGAGGGAACAAAGACGGAGGGTTGAGGAGGCTGAGCGTCAGTATGAATCATATTTGAAGGAATGGGAGTATAGAGAAAGAGAAAAAGAGAAAGAACGCCAGTATGAAAAGGAGAAGGAGAAGGAAAGGGAACGCAAACGGAGAAAGGAGATACTTTATGATGAAGAGGATGATGATGAGGATTCTAGGAAGAGGTGGCGGAGAAATGTGCTAGAGGAGAAGAGAAAGAAGAGGCTGCGTGAAAAGGAAGATGACCTGGCTGACAGACAAAAAGAAGAGGAAGAAATTGTTGAGGCTGAGAAGAGGGCCGAGGAGGATCAACAGCAGAAGCGGCAGAGAGATGCGTTGAAGCTATTATCAGAGCATGTGGTAAAGAGCAGTGACAAAACTATGTCTACTGAAGAGATTACTAATAAAGTAAAAAACATTGTTGCTGAACAAGATACTGTAGCTGATTATAGTCGTGAAGGTCACATTGGTGATGATAATTCACTAAATGCTATCAACGATGAATCAGCCATGGCATCTGTGGCCACAACTGATACACAGTCAACAGGAAATGCTCCTACGAAGAAGTTAGGATTTGGTCTAGTGGGCTCAGGGAAAAGAACAACTGTCCCTTCTGTTTTCCATGAAGAGGAGGATGATGATGCACACAAGGATAAAAAAATGAGGCCTTTGGTTCCAATTGATTACTCGACAGAGGAATTGCAAGCTGTTCAACCTACTGCTTCTGGGGCAACACCACCAAATTTGGCTGCAGCTGCAGAATTTGCAAAACGTATATCCAGTACCAATTTCAAGGAAGAGAAGCTGGACGGAGATCGGGATAGAAGTAGGCGTTCAAATGAGAAGTCTAACCACCGGGACAGGGACAGGAGTGATGAAGATGGCACTCACAACAGAGATGAAAACAAGGAGAAAATTCCTGACCGCGACAGGGATCGAGATCATGGCTCGGAGAAACTTAAGACTCATGATAACAGGAGGCTTTTTGATGCAAAACAGTTAATTGATATGATACCAAAGACCAAGGAGGAGTTGTTCTCATATGAGATTGACTGGACAGTGTATGACAAGCATCAATTACATGAAAGAATGAGACCATGGATTTCAAAGAAAATCAAAGAGTTTTTGGGGGAAGAAGAAAATACCTTGATAGATTATATTGTTTCAAGTACACAAGAACATGTGAAAGCATCCCAAATGCTAGAGCGACTTCAGACCATATTGGATGAAGAGGCTGAAATGTTTGTTCTCAAGATGTGGAGAATGCTCATCTTTGAAATAAAGAAGGTAGAGACAGGGCTTGCTTTGAGGTCAAAATCATGA 2847 0.4559 MADSASSPATLEPNPKPSESGAPNSHPNQPDPIPQSTQLQSSTPSSTPNPNSNPPLASTLSLPPPPSLLYAPPQVPGVLPPSTPSFRPLAPQVPQFSPLPNPAGAYQNPTVPPPGVASAAVPQMQPMMSYQVPTVPATNPALRPFAPIPNGYAAPPQGTVTPAGIPRYPPPYGTMVRPVYPPRPPGLVNVLPVSRPPVAGIPPVRPIIPPVVRPVVAPSVTQAEKPQTTVYIGKIAPTVENEFMLSLLQLCGNIKSWKRPQDLSSGTPKSFGFYEFETAEGVLRAMRLLTKLNIDGQELMININEAMKEYLERYVQRKTENSEKKESQAAGVEKDDEGAKSSDANEVAKPDGDLLNKEDNDSGNKKSHDVANFGIVTDEDKEADRDALEKITKMIEERLKTRPLPPPPAQPTGNGSVNLTSEQPAKTRDGDSDVDTKKSETAEDKSEKETNSDNKLTSEHDKPETPDRRHDRKSRERDRDRELKREKERELERYEREAERERIRKEREQRRRVEEAERQYESYLKEWEYREREKEKERQYEKEKEKERERKRRKEILYDEEDDDEDSRKRWRRNVLEEKRKKRLREKEDDLADRQKEEEEIVEAEKRAEEDQQQKRQRDALKLLSEHVVKSSDKTMSTEEITNKVKNIVAEQDTVADYSREGHIGDDNSLNAINDESAMASVATTDTQSTGNAPTKKLGFGLVGSGKRTTVPSVFHEEEDDDAHKDKKMRPLVPIDYSTEELQAVQPTASGATPPNLAAAAEFAKRISSTNFKEEKLDGDRDRSRRSNEKSNHRDRDRSDEDGTHNRDENKEKIPDRDRDRDHGSEKLKTHDNRRLFDAKQLIDMIPKTKEELFSYEIDWTVYDKHQLHERMRPWISKKIKEFLGEEENTLIDYIVSSTQEHVKASQMLERLQTILDEEAEMFVLKMWRMLIFEIKKVETGLALRSKS* 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00866 948 Coils Coil 581 614 - -
Rops1g00866 948 SUPERFAMILY RNA-binding domain, RBD 201 304 IPR035979 GO:0003676
Rops1g00866 948 CDD RRM_RBM25 228 311 IPR034268 -
Rops1g00866 948 Coils Coil 477 526 - -
Rops1g00866 948 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 1 948 - -
Rops1g00866 948 MobiDBLite consensus disorder prediction 712 734 - -
Rops1g00866 948 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 299 IPR000504 GO:0003723
Rops1g00866 948 FunFam RNA Binding Motif protein homolog 827 943 - -
Rops1g00866 948 SMART pwi_2 864 937 IPR002483 GO:0006397
Rops1g00866 948 MobiDBLite consensus disorder prediction 681 695 - -
Rops1g00866 948 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 306 IPR000504 GO:0003723
Rops1g00866 948 Pfam PWI domain 871 934 IPR002483 GO:0006397
Rops1g00866 948 Coils Coil 529 557 - -
Rops1g00866 948 SMART rrm1_1 229 302 IPR000504 GO:0003723
Rops1g00866 948 MobiDBLite consensus disorder prediction 1 91 - -
Rops1g00866 948 MobiDBLite consensus disorder prediction 426 518 - -
Rops1g00866 948 MobiDBLite consensus disorder prediction 584 620 - -
Rops1g00866 948 Gene3D - 219 338 IPR012677 -
Rops1g00866 948 MobiDBLite consensus disorder prediction 396 518 - -
Rops1g00866 948 MobiDBLite consensus disorder prediction 530 568 - -
Rops1g00866 948 MobiDBLite consensus disorder prediction 1 56 - -
Rops1g00866 948 ProSiteProfiles PWI domain profile. 851 948 IPR002483 GO:0006397
Rops1g00866 948 SUPERFAMILY PWI domain 869 936 IPR036483 GO:0006397
Rops1g00866 948 MobiDBLite consensus disorder prediction 318 369 - -
Rops1g00866 948 MobiDBLite consensus disorder prediction 768 831 - -
Rops1g00866 948 MobiDBLite consensus disorder prediction 57 91 - -
Rops1g00866 948 MobiDBLite consensus disorder prediction 681 831 - -
Rops1g00866 948 Gene3D PWI domain 827 943 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00866 K12822 - gmx:100809428 1194.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00866 1 20973917 20980312 Rops1g00866 1 20973917 20980312 ECH