Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00855 ATGTTCAAACAATCCAATGAAGAACAGGATGTAAGTAATATGAAGGTTAGAAATTGTGATACAGCAGAAAGCCGGGTTCAAAGCATCGATGAGGAAACATCTGGGATTTCATCATTTCAATTAGGAGATTTGAGTAGTAGCTGGTGCCCTTTGGAATTTTTTAAACCAGTTTCTATTAAGGCAGCCAATAGAGCATTCTTAGATCATAAAGTAACTCAGTCCTCACCTTCCACTGCACTCTCTTTTGTGGAGACAGTGCCTCAAGATGCACAGAATTCTCATATTACAGCTTTTAATTCAGGAGATGGATCCCCAAAGTCAGATAATGAGTCAACTTCATCTATGACCATACGGGATGTACATATTTCGGTGCGGTTAATGGAGGACTTTCTTCATCTTGCTAAAGAAAATACAGAAAATGATCTGGAAACATGTGGTATACTTGGTGCCTTTCTTGAGAAGGGAACCCTCTATATGACTACTCTGATCATACCAAAGCAGGAATCGGCTTCCAATTCTTGTCAGGCTACAAATGAGGAGGAAGTTTTCACAATTCTAAATGAAAGATCCCTTTATCCTGTGGGATGGATCCATACACATCCCTCTCAAAGTTGTTTCATGTCATCGGTGGATCTGCACACTCAATATTCCTACCAGGCGATGATTCCTGAGGCATTTGCCATTGTCTTGGCACCAACTGATACCTCAAGGAGCTGTGGACTATTTCGCCTAACCGACCCTGAAGGAATGAGTATTCTAAGAAATTGCCAGGAGAAGGGATTTCATCCACACAAAGAACCAGACAATGGCATACCTGTATGTGAAAGTATCAATACAAGAGGCACATCTGAAAGAATAATGCTGATATACAGTTGTTGTAATGTTTGGTTTAATGTAATAAGGAGCACCACCAAGAAAGCCTATGCTGACTGA 933 0.4051 MFKQSNEEQDVSNMKVRNCDTAESRVQSIDEETSGISSFQLGDLSSSWCPLEFFKPVSIKAANRAFLDHKVTQSSPSTALSFVETVPQDAQNSHITAFNSGDGSPKSDNESTSSMTIRDVHISVRLMEDFLHLAKENTENDLETCGILGAFLEKGTLYMTTLIIPKQESASNSCQATNEEEVFTILNERSLYPVGWIHTHPSQSCFMSSVDLHTQYSYQAMIPEAFAIVLAPTDTSRSCGLFRLTDPEGMSILRNCQEKGFHPHKEPDNGIPVCESINTRGTSERIMLIYSCCNVWFNVIRSTTKKAYAD* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00855 310 ProSiteProfiles MPN domain profile. 120 250 IPR037518 -
Rops1g00855 310 PANTHER AMSH-LIKE PROTEASE 13 277 - -
Rops1g00855 310 FunFam AMSH-like ubiquitin thioesterase 2 100 287 - -
Rops1g00855 310 CDD MPN_AMSH_like 117 269 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Rops1g00855 310 SUPERFAMILY JAB1/MPN domain 120 249 - -
Rops1g00855 310 Gene3D Cytidine Deaminase, domain 2 99 286 - -
Rops1g00855 310 MobiDBLite consensus disorder prediction 94 114 - -
Rops1g00855 310 SMART pad1_6 119 247 IPR000555 GO:0005515|GO:0008233|GO:0008237
Rops1g00855 310 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 117 224 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00855 Rops-Chr1 20860276 20865086 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00855 K11866 - gmx:100807282 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00855 1 20860276 20865086 Rops1g00855 1 20860276 20865086 ECH