Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00837 ATGGCTCGCAAGAAGATCAGAGAGTACGACTCTAAGAGGTTGTTGAAGGAGCACTTTAAGAGACTCTCTGGCAAGGAGTTGCCCATCAAGTCTGCACAAGTTACATCATCCACTGATTTCAATGAGCTGCAAGACAAGGAACCTTGGCTTTCATCTTCTAAATTGGTTGTGAAACCTGACATGTTATTTGGAAAGCGTGGTAAAAGCGGTTTGGTTGCCTTAAATTTGGATTTTGCTCAAGTTGCTTCATTTGTGAAAGAGCGTCTTGGAACAGAGGTTGAGATGGGTGGATGCAAAGGACCCATAACAACTTTCATTGTTGAACCTTTCATCCCACACAATGAAGAGTTTTACCTTAACATTGTCTCCGACAGACTTGGGAACAGCATAAGCTTTTCAGAATGTGGAGGAATTGAAATTGAAGAGAATTGGGATAAGGTTAAGACTATATTTGTTCCAACAGGAGTGTCTATTACATCAGAAATCGTTGCCCCACTTGTTGCAACCCTTCCCTTGGAGATCAAAGGAGAAATTGAGGAATTTCTGAAGGTGATTTTCACTCTGTTTCAAGACCTGGATTTCACTTTCTTAGAGATGAATCCTTTCACATTGGTTGATCGAAAGCCTTATCCTTTGGATATGAGAGGCGAGTTAGATGACACTGCTGCTTTCAAGAACTTCAAGAAATGGGGAAACATTGAATTTCCATTGCCATTTGGAAGGGTTATGAGTGCCACTGAGTCCTTCATTCATGGATTAGATGAAAAGACAAGTGCATCTTTAAAATTCACTGTGTTGAACCCAAAGGGTCGAATTTGGACCATGGTTGCAGGGGGAGGTGCTAGTGTCATCTATGCTGATACAGTAGGAGATCTTGGCTTTGCATCCGAGCTTGGAAACTATGCAGAATATAGTGGTGCACCCAATGAAGAGGAGGTCTTGCAGTACGCCAGAGTTGTAATTGATTGTGCAACCGCAAATCCTGATGGCCAAAAGAGAGCTCTTGTGATAGGAGGAGGCATAGCTAACTTCACTGATGTTGCTGCTACATTTAGTGGCATAATCCGGGCATTAAAGGAGAAGGAGTCGAAGTTAAAAGCAGCAAGGATGCACATTTATGTGAGGAGAGGGGGTCCCAACTACCAAAAGGGTCTAGCATTAATGAGAGCACTTGGAGAGGAAATTGGCATCCCCATTGAGGTTTATGGACCTGAAGCAACAATGACCGGTATATGCAAAGAGGCAATACAGTGCATCACTGCAGCTGCCTAA 1272 0.43 MARKKIREYDSKRLLKEHFKRLSGKELPIKSAQVTSSTDFNELQDKEPWLSSSKLVVKPDMLFGKRGKSGLVALNLDFAQVASFVKERLGTEVEMGGCKGPITTFIVEPFIPHNEEFYLNIVSDRLGNSISFSECGGIEIEENWDKVKTIFVPTGVSITSEIVAPLVATLPLEIKGEIEEFLKVIFTLFQDLDFTFLEMNPFTLVDRKPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFGRVMSATESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGFASELGNYAEYSGAPNEEEVLQYARVVIDCATANPDGQKRALVIGGGIANFTDVAATFSGIIRALKEKESKLKAARMHIYVRRGGPNYQKGLALMRALGEEIGIPIEVYGPEATMTGICKEAIQCITAAA* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00837 423 Coils Coil 422 423 - -
Rops1g00837 423 Gene3D - 240 422 IPR016102 -
Rops1g00837 423 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 4 236 - -
Rops1g00837 423 FunFam ATP-citrate synthase alpha chain protein 1 233 - -
Rops1g00837 423 Pfam ATP citrate lyase citrate-binding 241 417 IPR032263 -
Rops1g00837 423 Pfam ATP-grasp domain 6 203 IPR013650 -
Rops1g00837 423 FunFam ATP-citrate synthase alpha chain protein 240 422 - -
Rops1g00837 423 PANTHER SUCCINYL-COA SYNTHETASE BETA CHAIN 5 392 IPR005809 GO:0006099
Rops1g00837 423 SUPERFAMILY Succinyl-CoA synthetase domains 257 403 IPR016102 -
Rops1g00837 423 Gene3D - 1 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00837 Rops-Chr1 20600283 20604113 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00837 1 423 Acyl Lipid Metabolism Gene Families AT1G10670 89.598 0.0 788
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00837 K01648 - gmx:100818180 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00837 1 20600283 20604113 Rops1g00837 1 20600283 20604113 ECH