Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00836 ATGGCAATAGAAGAAGCACCCATTTATGGTGATATCTTAGAGGCCATATTCTCACACGTGCCACTCATTCACCTTGTGCCCGCTTCTCACGTGTCAAAGGCATGGAACCATGCAGTGTCCTCCTCGTTAGCTCACGTAAGACCCATAAAGCCATGGCTCATGGTTCTCACCCAAAGCACTCGTTGCTCGCACGTGACAACACACGCGTACGACCCTCGCTCGCACGTGTGGGTCGAGATAAAACCCGAGCCGTCGATCAGAAACAGGCGTTACACCTCCACCGTCCGATCATCTCACTCGACACTGCTCTACACGCTGTCCCCTAATGAGTTCGCTTTCTCCCTCGACGCGCTTCATGTTAAGTGGCACCACGCGCCTGCTCCGCGCGTGTGGCGAGTAGATCCCATTGTAGCGCGCGTGGGCAAGAGCGTGGTGGTTTCCGGCGGCGCGTGCGAGTTCGAGGATGATCCTCTGGCGGTGGAGATGTACGATATGGACACCGGCGTTTGGGTTACGTGCCAGTCGATGCCGGAGATGCTGAAAGGCTCGTCGGCGTCGACATGGCTGTCGGTGGCGGTCACCGGAGATTCGATGCTTTTGACGGAGAAAAACTCCGGCGTGACTTACTTGTTCGACACCGTTTTGAGGAAGTGGAAAGGGCCATTTGATTTGCGACCTGATCAGAGTGTTCACTACTGCGTCACCGGAACCCTAGGGGAGCGTTTGATGGTGATAGGGGTGGTTGGGGAAGCGGAGAAAAGGGTGAAGTTGTGGGAAGTGAGAGGGGAATTAGGTTCGGGAATGGAGGAAGTGAGTGAGATGCCGAAGGAGATGGTTCGGAAGGTGAAGGGTGGTTCGGAGTTAGGTTCGGTGGATGTGACTTGGGTTGGGGATTATGTTTACGTGAGGAACACAATGGAACCTGAGGAGGTTGTGATGTGTGAGGTTTTGGAAGAAGGGGGTGGGTGTGAGTGGAGGAGTGTGACGAACGTGGCGGTGGATGGTGGCATGAGGATGGTGGTTTACGGCGGCGATGTGAGAATGGAGGATCTGCAGAGGGCGGTGATGACGGAGAAAACGATATTTTGCATGAAACAAAAGTGA 1104 0.5462 MAIEEAPIYGDILEAIFSHVPLIHLVPASHVSKAWNHAVSSSLAHVRPIKPWLMVLTQSTRCSHVTTHAYDPRSHVWVEIKPEPSIRNRRYTSTVRSSHSTLLYTLSPNEFAFSLDALHVKWHHAPAPRVWRVDPIVARVGKSVVVSGGACEFEDDPLAVEMYDMDTGVWVTCQSMPEMLKGSSASTWLSVAVTGDSMLLTEKNSGVTYLFDTVLRKWKGPFDLRPDQSVHYCVTGTLGERLMVIGVVGEAEKRVKLWEVRGELGSGMEEVSEMPKEMVRKVKGGSELGSVDVTWVGDYVYVRNTMEPEEVVMCEVLEEGGGCEWRSVTNVAVDGGMRMVVYGGDVRMEDLQRAVMTEKTIFCMKQK* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00836 367 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 11 291 - -
Rops1g00836 367 CDD F-box_SF 11 40 - -
Rops1g00836 367 Gene3D - 46 278 IPR015915 GO:0005515
Rops1g00836 367 SUPERFAMILY Kelch motif 51 253 IPR015915 GO:0005515
Rops1g00836 367 Pfam F-box domain 11 43 IPR001810 GO:0005515
Rops1g00836 367 SUPERFAMILY F-box domain 11 43 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00836 Rops-Chr1 20579738 20580933 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00836 - - gmx:100819427 525.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00836 1 20579738 20580933 Rops1g00836 1 20579738 20580933 ECH