Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00828 ATGGCAACCTCGTATCTAACGCTGGTTCCTTCTTCCACTTTCCGACCAGCATCGGTTCGCTGCGCCAATGAGCGCCAGGCGCTATTTAATCGCATTGCTCCTGTCTATGATAACTTGAATGATTTGCTGAGCCTGGGTCAGCACCGGATTTGGAAACGAATGGCAGTTTCATGGACTGGAGCAAAAATGGGTGACCGTGTGTTGGATATATGCTGTGGAACTGGGGATTTAACGTTTCTCTTATCAGAGAAAGTTGGCTCCGATGGCAAAGTGATTGGTCTTGATTTCTCGAATGAACTGCTATCTATTGCCTCATCTCGGCAGCACTCTCTTCCAAAGAACTGCTTCACTAATATTGAGTGGGTTGAAGGTGATGCTCTTGACTTGCCATTTGCTGATGGTTGGTTTGATGCTATCTCTATGGGCTATGGTCTTCGAAATGTGGTTGATAGGCATAAAGCCATGCAGGAAATTTTGCGTGTCCTAAAACCTGGCTCTAGAGTGTCTATTCTTGACTTTAATAAAAGCAATGAGTTACTAACTTCTTCAATTACGGAATGGATGATTGACAATATTGTTGTCCCTGTAGCCTCTGGCTATGGCCTTTCAGAGGACTACAGATATCTAAAGAGTTCAATAAGACAATTTTTAACAGGGAAAGAATTGGAGAAACTTGCTTTAGAAATAGGATTTTCTACTGCCCGACATTATGAGATCAGTGGAGGCCTCATGGGGTGCTTGGTAGCTAAACGTTAG 756 0.4365 MATSYLTLVPSSTFRPASVRCANERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWTGAKMGDRVLDICCGTGDLTFLLSEKVGSDGKVIGLDFSNELLSIASSRQHSLPKNCFTNIEWVEGDALDLPFADGWFDAISMGYGLRNVVDRHKAMQEILRVLKPGSRVSILDFNKSNELLTSSITEWMIDNIVVPVASGYGLSEDYRYLKSSIRQFLTGKELEKLALEIGFSTARHYEISGGLMGCLVAKR* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00828 251 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 21 243 IPR029063 -
Rops1g00828 251 NCBIfam ubiquinone/menaquinone biosynthesis methyltransferase 27 250 IPR004033 GO:0008168
Rops1g00828 251 Hamap Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 16 251 IPR004033 GO:0008168
Rops1g00828 251 PANTHER METHYLTRANSFERASE 34 233 - -
Rops1g00828 251 Pfam ubiE/COQ5 methyltransferase family 26 245 - -
Rops1g00828 251 ProSitePatterns ubiE/COQ5 methyltransferase family signature 1. 36 51 IPR023576 GO:0008168
Rops1g00828 251 Hamap 2-phytyl-1,4-naphtoquinone methyltransferase [menG]. 24 251 IPR032904 GO:0042372|GO:0052624
Rops1g00828 251 CDD AdoMet_MTases 66 170 - -
Rops1g00828 251 ProSiteProfiles UbiE family SAM-binding methyltransferase profile. 14 251 IPR004033 GO:0008168
Rops1g00828 251 Gene3D Vaccinia Virus protein VP39 31 251 IPR029063 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00828 62 188 Acyl Lipid Metabolism Gene Families AT3G18000 29.134 1.59e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00828 K23095 - gmx:100789470 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00828 1 20189108 20192001 Rops1g00828 1 20189108 20192001 ECH