Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00262 ATGCCAGAGGTTTATACTGTGAAGGTTGAGGAGGGAAGGCTTGCAACTGATGGAAAACCATCAGTAGGCCCTGTCTATAGGAGCATTTATGCCAAAGATGGTCTTTTGGAGGTTCCTGCTGGTTTGGAGTCCCCATGGGATTTGTTCAGTGAGAGTGCTAAGAGAAACCCCAACAATCCAATGCTGGGCAGGCGCCAAAAACTTGATTCTAAGGTTTATGATGCTGCCATCCAAATGGGCTCTGCCATGAGGAGCCGTGGTGTCAATCCTGGAGATCGTTGTGGCATATATGGGTCCAACTGTTCTGAATGGGTCTTGGCAATGGAGGCTTGCAATAGCTGTGCAGTAACTTATGTTCCATTATATGACACCCTTGGTCCTAATGCTGTGGAGTTTATCATAAACCATGCTGGAGTTTCAATTGCATTTGTACAGGAAAAAAAGATTCCATCAATTTTGTCATGTCTTGATCGGTGTTCTTCAAATCTTAAAACTATTGTAAGCTTTGGAAATGTTTCAACCACACAAAAAAAGGAAGCTGAGGAGCATGGCACATCCTGCTTCTCCTGGGGAGAATTTCTCCAGTTGGGAAGTCTGGATGGGGATCTACCAACAAAAAAGAAGACTGACATTTGCACAATAATGTACACAAGTGGAACAACTGGAGAACCCAAAGGTGTCATTATTAAGAATGAGGCTTTCATGGCTGAAGTGTTGTCTATTGACCATATACTTAAGTTAACAGACAGAGTGGCAGCAGAAGACGATGTGTACTTCTCCTTTCTTCCTCTTGCTCATGTATATGACCAGATAATGGAAACCTATTGCATCTTCAAGGGCTCATCAATAGGATTTTGGCAAGGCGATGTCAGGTTCTTGATGGAAGATGTTCAGGCACTGAAACCAACTATATTTTGTGGTGTTCCTAGAGTTTTTGACCGTATTTATGCCGGTATCAATAGCAAAGTTTCATCTGGAGGAGCACTGCAAAGTTCATTATTTCAGTTTGCATACCAGTACAAGTTAAAATATCTGGAGAAGGGTCTTCCTCAACACAAAGCAGCACCTCTATTTGATAGGCTTGTGTTTGATAAGACAAAACAAGCACTAGGTGGACGTGTTCGTATCCTGTTATCAGGAGCTGCTCCTTTGCCTAGGCATGTGGAGGAGTTTATGAGAGTCACTAGTGGATCTACATTATCACAAGGATATGGTCTTACTGAAAGTTGTGCTGGGTGTTTCACAGCAATTGGTGATGTGTATTCTATGACAGGAACAGTTGGAGTTCCCATGACAACCATTGAGTCAAGGCTTGAATCTGTGCCAGAGATGGGATATGATGCACTTTCCAATGAACCCCGTGGAGAAATTTGCCTGAGAGGAAATACCTTGTTCTCTGGTTATCACAAGCGTCAAGATCTTACCAAAGAGGTTATGGTTGATGGTTGGTTTCATACAGGTGACATTGGAGAATGGCAACCAAATGGAGCCATGAAAATTATTGATAGGAAAAAGAATATCTTTAAATTGTCTCAAGGAGAATATATTGCAGTGGAGAATATTGAAAACAAGTATTTGCAATGCCCTCTTATAACATCGATTTGGGTGTATGGAAACAGTTTTGAGTCTTCCTTGGTAGCTGTGGTGGTCCCTGAAAGAAAGGCCCTGGAGGATTGGGCAATAGAGCATAATTTGACTGATGATTTTAAATCTTTATGTGAAAATCTAAAGGCAAGAAAATACATTTTGGATGAGCTCAACAACACTGCTCAGAAACTCCAACTTAGAGGATTTGAGCTGCTGAAAGCTGTTCATCTGGAACCAATTCCCTTTGACATGGAGAGAGATCTAATAACTCCAACATTCAAATTGAAGAGACCACAATTGCTCAAGTACTATAAGGATCATATTGATCAACTATACAATGAAGCAAAGGGAACAAAGGTGTGA 1950 0.4144 MPEVYTVKVEEGRLATDGKPSVGPVYRSIYAKDGLLEVPAGLESPWDLFSESAKRNPNNPMLGRRQKLDSKVYDAAIQMGSAMRSRGVNPGDRCGIYGSNCSEWVLAMEACNSCAVTYVPLYDTLGPNAVEFIINHAGVSIAFVQEKKIPSILSCLDRCSSNLKTIVSFGNVSTTQKKEAEEHGTSCFSWGEFLQLGSLDGDLPTKKKTDICTIMYTSGTTGEPKGVIIKNEAFMAEVLSIDHILKLTDRVAAEDDVYFSFLPLAHVYDQIMETYCIFKGSSIGFWQGDVRFLMEDVQALKPTIFCGVPRVFDRIYAGINSKVSSGGALQSSLFQFAYQYKLKYLEKGLPQHKAAPLFDRLVFDKTKQALGGRVRILLSGAAPLPRHVEEFMRVTSGSTLSQGYGLTESCAGCFTAIGDVYSMTGTVGVPMTTIESRLESVPEMGYDALSNEPRGEICLRGNTLFSGYHKRQDLTKEVMVDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYIAVENIENKYLQCPLITSIWVYGNSFESSLVAVVVPERKALEDWAIEHNLTDDFKSLCENLKARKYILDELNNTAQKLQLRGFELLKAVHLEPIPFDMERDLITPTFKLKRPQLLKYYKDHIDQLYNEAKGTKV* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00262 649 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 20 641 - -
Rops1g00262 649 Pfam AMP-binding enzyme C-terminal domain 521 572 IPR025110 -
Rops1g00262 649 CDD LC-FACS_euk 72 641 IPR045311 GO:0004467|GO:0006631
Rops1g00262 649 Gene3D - 37 503 IPR042099 -
Rops1g00262 649 Pfam AMP-binding enzyme 49 511 IPR000873 -
Rops1g00262 649 ProSitePatterns Putative AMP-binding domain signature. 214 225 IPR020845 -
Rops1g00262 649 SUPERFAMILY Acetyl-CoA synthetase-like 39 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00262 Rops-Chr1 7239341 7249724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00262 5 645 Acyl Lipid Metabolism Gene Families AT1G64400 55.505 0.0 791
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00262 K01897 - gmx:100779735 1192.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00262 1 7239341 7249724 Rops1g00262 1 7239341 7249724 ECH