Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03894 ATGGCCGGTCAGTTATCGAAGGCCGAGGAATTCGAGAAGAAAGCTGAGAAGAAGCTCAACGGTTGGGGCTTGTTCGGTTCCAAATACGAAGACGCTGCTGATCTCTTCGATAAAGCCGCCAATTCCTTCAAACTTGCTAAATCATGGGATAAAGCCGGATCGACATACCTAAAGTTAGCAAGTTGTCATTTGAAGTTGGAAAGCAAGCATGAAGCTGCACAGGCTTATGTTGATGCTGCACATTGCTATAAAAAGACTAATATAAACGAGGCTGTATCTTGCTTAGACCATGCTGTAAATCTTTTCTGTGATATTGGTAGACTCTCTATGGCTGCTAGATATTTGAAGGAAATTGCTGAGTTATACGAGTCTGAACAGAATATTGAGCAGGCTATTGTTTACTATGAAAAATCAGCTGATTTTTTTCAAAATGAAGAAGTGACAACTTCTGCAAACCAGTGCAAGCAAAAAGTTGCCCAATTCGCTGCTCAGCTAGAGCAATATCAGAAGTCTATTGAGATTTATGAAGAGATAGCTCGCCAATCTCTTAACAATAATTTGCTGAAGTATGGAGTTAAAGGCCATCTGCTTAATGCTGGCATTTGCCAACTCTGTAAAGGGGATGTTATTGCCATAACCAATGCATTAGAGAGATATCAGGAATTAGATCCAACATTTTCAGGAACACGTGAATATAGATTATTGGCGGATATTGCTGCTGCAATTGATGAAGAAGATGTTGGAAAGTTTACTGATGTTGTCAAGGACTTTGATAGCATGACCCCTCTGGATGCTTGGAAGACAACACTTCTTCTGAGGGTGAAGGAAAAACTGAAAGCCAAAGAACTAGAGGAGGATGATCTTACTTAA 870 0.4023 MAGQLSKAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGSTYLKLASCHLKLESKHEAAQAYVDAAHCYKKTNINEAVSCLDHAVNLFCDIGRLSMAARYLKEIAELYESEQNIEQAIVYYEKSADFFQNEEVTTSANQCKQKVAQFAAQLEQYQKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVIAITNALERYQELDPTFSGTREYRLLADIAAAIDEEDVGKFTDVVKDFDSMTPLDAWKTTLLLRVKEKLKAKELEEDDLT* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03894 289 FunFam Alpha-soluble NSF attachment protein-like 6 285 - -
Rops11g03894 289 SMART tpr_5 53 86 IPR019734 GO:0005515
Rops11g03894 289 SMART tpr_5 112 145 IPR019734 GO:0005515
Rops11g03894 289 Pfam Soluble NSF attachment protein, SNAP 6 278 - -
Rops11g03894 289 Coils Coil 151 185 - -
Rops11g03894 289 CDD SNAP 19 278 IPR000744 GO:0006886
Rops11g03894 289 Gene3D Tetratricopeptide repeat domain 5 288 IPR011990 GO:0005515
Rops11g03894 289 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 4 279 IPR000744 GO:0006886
Rops11g03894 289 SUPERFAMILY TPR-like 6 280 IPR011990 GO:0005515
Rops11g03894 289 PRINTS NSF attachment protein signature 91 108 IPR000744 GO:0006886
Rops11g03894 289 PRINTS NSF attachment protein signature 152 175 IPR000744 GO:0006886
Rops11g03894 289 PRINTS NSF attachment protein signature 119 136 IPR000744 GO:0006886
Rops11g03894 289 PRINTS NSF attachment protein signature 224 244 IPR000744 GO:0006886
Rops11g03894 289 PRINTS NSF attachment protein signature 28 47 IPR000744 GO:0006886
Rops11g03894 289 PRINTS NSF attachment protein signature 183 202 IPR000744 GO:0006886
Rops11g03894 289 PRINTS NSF attachment protein signature 255 275 IPR000744 GO:0006886
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03894 Rops-Chr11 72912828 72918124 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03894 K15296 - gmx:100812517 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03894 11 72912828 72918124 Rops9g00774 9 12213275 12217837 ECH
Rops11g03894 11 72912828 72918124 Rops11g03894 11 72912828 72918124 ECH
Rops11g03894 11 72912828 72918124 Rops9g00774 9 12213275 12217837 PCT