LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops11g03865	ATGAAGAAGAAGAAGAAGAAGAAGAAAAATGTTGAGGGCTTTGTGACTTTGATTGAACTAAATAAAGTGTGTTCTGATTCATTAAGAGAAAGAGGAGAACCCACCCAGACGAAACGGAACATAATAAGGCGTCACAAGGGTTTCAATAAGCGAAGCGCTGAGACTTTTTTGTCGATTCTTCACAAACTGTCATCATTGTTCAGGAAGTGGAAAGTTACTGAGCTGAAAGAGGAGCTAAAGAGAAGGAAGTTAACTACCAAAGGTTTAAAGGATGATTTAATCAAGCGTTTGGATGAAGCCCTTCGCCTTGAAAGGGAGGCTGCCGAGGCTTCTGATAAGGATGAGGCGGCCAATGGTTTTGATTATCATGAAGCTGGGGTGAAAGATTCGCAGACGGGTACTGCTGATGATGAAGTGGTGGATACGATTGAAAGGGAAAATGCACAAACTCTTGAAACTTCTGGTAAGGGGAATATTGGTGCAGAAAGTGCCCACACAGTTGAAACTTCTGGAAAGGGGAATAGTGGTGCAGTTGAACCAATTGAAAAGGAAAATGCAGAAAAGATTCCAGAGGTTGTGGATAATGAGGGCGATAAGAATGACAAGCAGGATGGTGTTACCGTCCCAGTTGACATTAATAAATGCATGTCTGTCATGGATCAAGAAATTGAGCATACAGGCTTGCCAGCTGGGGTAGATTCTGCAAATGTGGGAGAGGAGGTAATTGCTCATGCTTCTCCCGTGGAGCCCACCATTACAGTCACTGAGACTGCATTAACAGAAGCTGTAGTCATGGATCAAGAAATTGAGCATACGGGCTTGCCAGCTGGTGTAGATTCTGCAAATGTGGGAGAGGAGGTGATTGCTCATGCTTCTACCGTGGAGCCCACCATTACAGTCACTGAGACTGCATTAACAGAAGCTGTAGTCAGTGGTGGTCAGGATTCTTATAGTGCAGAAAAGAATAATGAGGATTCAGCAATCAAGCTGGAGAAAGAGGAGTCAAAGGCGCAGCTGGATAGTGTGGACTCGAAGGCCCAGCTGGAGTGTGACACAAAGCCCCTGTGCGAGGATCTCGTGCCCAACTCTTCTGTTCCAGAAAACCAGGTATCTGAGGTCAACATTAGTTTAGGGTGTCAAGTAAAATCTGATTCTATTTCTACTGATTCTGTGTCAATTAATCAAAAGAATGAACTAAAGGATACTATAATTGCTGATAATGTCAAATTAGAACAAGATAATGTTAGGCCGGAGATGGTGGAAGAACCATCATCCAGAAATGATGTACCTGTTTATGATGAATCACATTCAATGGATGTTGGAGGGCTGCATGAGAAAAAGGCATCTGTTGAGGAAATTAGCAAAATTGTTACAAGTCCGGACTTGAACAAGACCAATAGCAGTGATGATGTGGGGTATCCAGAAAAGTTGAACTTAGACAGAAGTTCTGGTGATGATTCCATGGAAGAGGATTTGCCTGAGACTAAGCAATTTGATTCTAAGTTTAATGTTGATGAACTTAGAGACAAAGTGGAGAGTATTGAAGTGCCTATTGTGAAGGAGGAAAGCAGTGCTGTAGTCGTGGGGGATGGTCTGTCTGCCGGAAAAAGTGATACCCATCAAGATACTGACATTAGTACTGTTGCCTTGGCTGAGAAACGAAAATATAATGAACAAGCATCACCTGGGAACAATGAGCCTGCAAAAAGGCAACGCAGGTGGAACACTGAAACAGTTAAAGGACCAGATGTGCAAAGCATTACTCCCAGACCTGTTACTACACCAAAGGATGAGTCAATTGCCCTGAAACGCAACTTCTCTAGGACCGATTCCTTTGCAATTGATGATGCACCTAAAGAACGCATTGTTCCACCATCACAAAATACCCCAACTAATTCCCTCAGGATTGATCGTTTTCTCCGGCCATTTACCCTAAAAGCAGTGCAAGAACTTCTTGGCAAGACTGGGAAGCTTACCAGTTTCTGGATGGACCAAATAAAAACCCATTGCTATGTCACTTACTCGTCCATAGAAGAAGCCATAGAGACACGAAATGCTGTGTATAATTTGCAATGGCCTCCAAATGGTGGGCGCCTCTTAGTTGCTGAGTATGTTGATCCTGAAGAAGTGAAGATGAAGTTAGAAGCTCCTCCTACTCAGGCTTCCCCTATCAGCAAAGCTCCAACAGTTCCTCCTGCACCACCTTCATCGCAGCCAGAGCCTTCCCCTCGTCAGCACAGGGAGCAGCATCCAGTTCCAGCTACTCTCCCACCTCCACCCCCATCGTTAAGGCCCCCACCAGTAGCAAGGGAGCGACTTCCATCCCCACCACCCCTTCCTGAGAAAGTTGACCCACCTATTGTCACTCTGGATGATCTTTTCCGCAAAACCACAGCAACTCCTCGGATCTACTATTTACCTTTGTCTGAAGAGCAAGTTGCCGCAAAACTAGCAGCACAGGGTAAAAGCACGAGGCAGTAG	2481	0.4474	MKKKKKKKKNVEGFVTLIELNKVCSDSLRERGEPTQTKRNIIRRHKGFNKRSAETFLSILHKLSSLFRKWKVTELKEELKRRKLTTKGLKDDLIKRLDEALRLEREAAEASDKDEAANGFDYHEAGVKDSQTGTADDEVVDTIERENAQTLETSGKGNIGAESAHTVETSGKGNSGAVEPIEKENAEKIPEVVDNEGDKNDKQDGVTVPVDINKCMSVMDQEIEHTGLPAGVDSANVGEEVIAHASPVEPTITVTETALTEAVVMDQEIEHTGLPAGVDSANVGEEVIAHASTVEPTITVTETALTEAVVSGGQDSYSAEKNNEDSAIKLEKEESKAQLDSVDSKAQLECDTKPLCEDLVPNSSVPENQVSEVNISLGCQVKSDSISTDSVSINQKNELKDTIIADNVKLEQDNVRPEMVEEPSSRNDVPVYDESHSMDVGGLHEKKASVEEISKIVTSPDLNKTNSSDDVGYPEKLNLDRSSGDDSMEEDLPETKQFDSKFNVDELRDKVESIEVPIVKEESSAVVVGDGLSAGKSDTHQDTDISTVALAEKRKYNEQASPGNNEPAKRQRRWNTETVKGPDVQSITPRPVTTPKDESIALKRNFSRTDSFAIDDAPKERIVPPSQNTPTNSLRIDRFLRPFTLKAVQELLGKTGKLTSFWMDQIKTHCYVTYSSIEEAIETRNAVYNLQWPPNGGRLLVAEYVDPEEVKMKLEAPPTQASPISKAPTVPPAPPSSQPEPSPRQHREQHPVPATLPPPPPSLRPPPVARERLPSPPPLPEKVDPPIVTLDDLFRKTTATPRIYYLPLSEEQVAAKLAAQGKSTRQ*	827

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops11g03865	826	MobiDBLite	consensus disorder prediction	578	593	-	-
	Rops11g03865	826	MobiDBLite	consensus disorder prediction	148	173	-	-
	Rops11g03865	826	Pfam	RNSP1-SAP18 binding (RSB) motif	781	822	IPR032552	-
	Rops11g03865	826	Gene3D	SAP domain	48	115	IPR036361	-
	Rops11g03865	826	MobiDBLite	consensus disorder prediction	555	596	-	-
	Rops11g03865	826	MobiDBLite	consensus disorder prediction	752	784	-	-
	Rops11g03865	826	MobiDBLite	consensus disorder prediction	474	498	-	-
	Rops11g03865	826	MobiDBLite	consensus disorder prediction	715	788	-	-
	Rops11g03865	826	MobiDBLite	consensus disorder prediction	724	741	-	-
	Rops11g03865	826	SUPERFAMILY	SAP domain	68	104	IPR036361	-
	Rops11g03865	826	Pfam	SAP domain	68	101	IPR003034	-
	Rops11g03865	826	SUPERFAMILY	RNA-binding domain, RBD	625	713	IPR035979	GO:0003676
	Rops11g03865	826	MobiDBLite	consensus disorder prediction	148	206	-	-
	Rops11g03865	826	PANTHER	SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN	69	826	-	-
	Rops11g03865	826	MobiDBLite	consensus disorder prediction	181	205	-	-
	Rops11g03865	826	SMART	sap_9	67	101	IPR003034	-
	Rops11g03865	826	ProSiteProfiles	SAP motif profile.	67	101	IPR003034	-
	Rops11g03865	826	MobiDBLite	consensus disorder prediction	459	498	-	-
	Rops11g03865	826	CDD	RRM_ACINU	631	711	IPR034257	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops11g03865	Rops-Chr11	72573196	72583412	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops11g03865	K12875		-	gmx:100786288	979.548

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops11g03865	11	72573196	72583412	Rops11g03865	11	72573196	72583412	ECH