Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03862 ATGCCGACACGGTGGTGGTGGTGGTTGTTGCTTGTTTTCTTTTTGTCGGAGACAATGGCTTACACAATGCCGGTTCAGGCCACTTTTTCTGCAAGGCTTGTTCACCGGTTCTCCAAAGAAATGAAACCGGTTCGGGTTTCGACCGGTGACTGGCCGGACCGGCGGAGCATGCGGTACTACGAGAAGCTTCTCAGCAACGACTTTCTCAGGCACAAGATCAACCTTGGTGGCGCTCGTCACCAGCTACTGGTCCCTTCTCTCGGTAGCAAAACGATGTCGCTTGGTAACGACTTTGGCTGGTTACATTACACGTGGATTGATATAGGCACACCGAGTACTTCGTTTCTTGTGGCATTAGATGCAGGGAGTGATCTCCTTTGGGTTCCATGTGATTGTATTCAGTGTGCTCCTTTGTCTTCAAGTTACTATTCCAATCTGGATAGAGATCTGAATGAGTATAGTCCATCGCGTTCGTTATCCAGCAAGCATCTGTCTTGCAACCATCAGTTATGTGATATGGGTTCCAATTGTAAAAGTTCCAAGCAGCAGTGTCCCTACACAGTCAGTTACTTATCGGAGAATACATCGAGTTCTGGATTGTTAGTTGAGGACATATTGCATCTTCAATCAGGAGATGGCAATGGCAGCAGCGGAAAATCTAACTCTTCTGTTCAGGCTCCAGTTGTTATTGGGTGTGGTATGAAGCAAAGTGGTGGTTATTTGGATGGGGTTGCTCCAGATGGTCTCTTGGGTTTGGGGCCTGGGGAGACTTCAGTTCCAAGTTTTCTTGCTAAATCAGGATTAATTCATGATTCTTTTTCCTTGTGCTTTAATGAAGATGATTCTGGTAGAATATTTTTTGGGGATCAGGGATCAACCGTCCAACAGTCTACTTCATTCTTGCCATTGGATGGAATATTTTCAACCTACATTGTTGGAGTGGAGGCATGTTGTATCAGGAATTCATGCCTTAAAGTGACAAGTTTTAAGGCGCAGGTTGATAGCGGAACATCATTTACATTTCTTCCTGGTCATGTATATGGAGCAATAGCCGAAGAGTTTGATAAACAAGTAAATGCTTCAAGATCTAGCTTTGAAGGATCTCCTTGGGAGTACTGTTATCCATCCAGTTCGCAACAGTTGCCGAAGGTTCCCAGCTTAACACTAATGTTTCAACAGAATAACAGTTTTGTGGTCTATAATCCTGTGTTTGTATTCTATGACAATCAGGGAGTTATTGGATTTTGTTTAGCCATACAACCAACCGAAGGGGATATGGGAACAATTGGACAGAACTTCATGACAGGGTACCGGTTGGTATTTGATAGGGAAAACAAGAAGTTAGCATGGTCACGGTCAAATTGTCAGGATCTCAGTCTAGGAAAGAGGATGCCCCTCTCTCCTCCGAATGAGACATCATCAAGCCCATTACCAACAGATGAGCAGCAAAGAACCGACGGGCATGCAGTTGCTCCAGCTGTTGCTGGAAGAGCTCCTCACAAACCTTCGGCTGCTTCATCTCTGATGATTTCATGCCGGCAAAATTGGCACTGCTATTTGTTTCTTCTATTGCAACTTTTGTCAGCCTTTTACTGA 1596 0.4474 MPTRWWWWLLLVFFLSETMAYTMPVQATFSARLVHRFSKEMKPVRVSTGDWPDRRSMRYYEKLLSNDFLRHKINLGGARHQLLVPSLGSKTMSLGNDFGWLHYTWIDIGTPSTSFLVALDAGSDLLWVPCDCIQCAPLSSSYYSNLDRDLNEYSPSRSLSSKHLSCNHQLCDMGSNCKSSKQQCPYTVSYLSENTSSSGLLVEDILHLQSGDGNGSSGKSNSSVQAPVVIGCGMKQSGGYLDGVAPDGLLGLGPGETSVPSFLAKSGLIHDSFSLCFNEDDSGRIFFGDQGSTVQQSTSFLPLDGIFSTYIVGVEACCIRNSCLKVTSFKAQVDSGTSFTFLPGHVYGAIAEEFDKQVNASRSSFEGSPWEYCYPSSSQQLPKVPSLTLMFQQNNSFVVYNPVFVFYDNQGVIGFCLAIQPTEGDMGTIGQNFMTGYRLVFDRENKKLAWSRSNCQDLSLGKRMPLSPPNETSSSPLPTDEQQRTDGHAVAPAVAGRAPHKPSAASSLMISCRQNWHCYLFLLLQLLSAFY* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03862 531 Gene3D Acid Proteases 290 457 IPR021109 -
Rops11g03862 531 Gene3D Acid Proteases 90 289 IPR021109 -
Rops11g03862 531 FunFam Aspartyl protease family protein 1 292 457 - -
Rops11g03862 531 FunFam Aspartyl protease family protein 1 88 289 - -
Rops11g03862 531 Pfam Xylanase inhibitor C-terminal 329 451 IPR032799 -
Rops11g03862 531 Pfam Xylanase inhibitor N-terminal 103 289 IPR032861 -
Rops11g03862 531 PANTHER ASPARTYL PROTEASES 21 448 IPR001461 GO:0004190|GO:0006508
Rops11g03862 531 MobiDBLite consensus disorder prediction 459 488 - -
Rops11g03862 531 MobiDBLite consensus disorder prediction 459 482 - -
Rops11g03862 531 SUPERFAMILY Acid proteases 96 456 IPR021109 -
Rops11g03862 531 PRINTS Pepsin (A1) aspartic protease family signature 427 442 IPR001461 GO:0004190|GO:0006508
Rops11g03862 531 PRINTS Pepsin (A1) aspartic protease family signature 331 342 IPR001461 GO:0004190|GO:0006508
Rops11g03862 531 PRINTS Pepsin (A1) aspartic protease family signature 108 128 IPR001461 GO:0004190|GO:0006508
Rops11g03862 531 ProSiteProfiles Peptidase family A1 domain profile. 102 451 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03862 Rops-Chr11 72523692 72527928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03862 95 458 Miscellaneous Gene Families AT1G44130 25.648 3.74e-21 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03862 - - gmx:100782209 890.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03862 11 72523692 72527928 Rops11g03862 11 72523692 72527928 ECH