Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03847 ATGGGAGACAATTCACCAGAGAGAAAATCTGGTTGTGGCTTGATATCATCAGTGTTCGGGAGACATGGTCTCTGGTCACGTAGAACAGTCTCTGCAGGTGCTTCTCCCATAGCCAACAACACCAATGATTCAAAACGACGACGTGGTGTCTCTACTGATGCTGCTATTGTTGGTGCAGTTTCATCTAACACCACAAACTCTTCATCTCGTTCTGTTTCCAAGTCTTCCTCATCCAATCCTCAGACACCAACCCAACATGTTGTGAACCAAAACATTCAAAGGAAACACCCCAATGAAACAAAAATGGCACATGGCCCATCATCAAGGGTGTCACCTACTCAAGGGTATGTGAACCAAGGAAGAAGGGTGCCTAAAGAAGCTGTTGGAATTTCTGGGGAGCTTGAAAGCATGATCAATGATCATCAAAGGTCCAAAGGAGGCAGTAACCTTGTTAGAGCTTCTTCTGGCAATGTGATGTTGTTTGGTAATTTAGGTAACCTTAGGCAAGGAGGTTCAGGACAAGATAACATTTCTTACAGCTCAATGGATTACCACATTGCAAAAGGAGGAAATACAAACTATAAAATGGGATATGAGAGTAAAGAGGTTAATAAACCCAGCAAGGAACAAACGGGTTCTTTGTGCAGGGCTTTGTCTACTAGAATGGATCCTGAACAATTGAAGATATTGGGGAATGAGGATTATAAGAATGGAAGGTTTGCTGAGGCATTGGCTTTGTATGATGCAGCCATTGCAATTGACCCCAATAAGGCTTCTTATAGGAGCAATAGAAGTGCTGCATTAACTGCTCTTGGTAGGGTTCTTGAGGCTGTGTTTGAATGTAGAGAAGCCATTCGAATTGAGTCTCATTACCAAAGAGCTCATAATCGGTTGGGTAAATTGCACTTTAGATTAGGAGAAACAGATAAGGCCTTGTATCATTATAAACAAGCAGGACCAGAGGTTGATCCAGATGAGGTTGCTAAAGTGAAAACTCTTCAGGTCCATCTAAACAAGTGCACCGAGGCTCGTAGGCTAGGAGATTGGAACACACTCATCATAGAGACCAAAAATGCTATATCATCCGGTGCAGATTCTGCTCCGTCAATATATGCATTGCAAGCCGAAGCCTTGCTGAAGCTCCGTAGGCATCAAGATGCAGACAAAGTAATGTCAAAGTGTCCTAATTTTGATGTTGATGAGTGCACTAAGTTCTTTGGACCTATTGGGAATGCTAATTTGTTGGTGACACGAGCTCAGGTTGATATAGCTTCCGGCAGATTTGAAGAAGCTTTAGAGGCAGCACAGAGAGCAGCTAGGCTGGACTCTAATAACAGGGAGGCAAATAAGGTGCTAAGAAAGGTTCGAGCTGTCACAGCTGCTAGAGCTAGAGGAAACGAGCTTTTCAAGACATCAAAATTCTCTGATGCTTGTGTAGCCTATGGAGAAGGCCTTGAGCATGATCCATATAACTCCCTTTTACTATGCAACCGAGCTGCTTGTAGATCAAAACTAGGCCAATTTGAAAAAGCCGTGGAAGATTGCAATGCTGCACTTAACTTACGCCCATCTTACAGCAAGGCCAGGTTGAGAAGAGCTGATTGTAATGCTAAGTTGGAAAGATGGGAAGCTTCAATACAAGACTACGAAATATTGCTAAGAGAGACACCAGAAGATGAGGAAGTGAATCGGGCATTGTTGGAGGCTCAAGCACAGATTAAGAAACAACAAGGTGAATAA 1740 0.431 MGDNSPERKSGCGLISSVFGRHGLWSRRTVSAGASPIANNTNDSKRRRGVSTDAAIVGAVSSNTTNSSSRSVSKSSSSNPQTPTQHVVNQNIQRKHPNETKMAHGPSSRVSPTQGYVNQGRRVPKEAVGISGELESMINDHQRSKGGSNLVRASSGNVMLFGNLGNLRQGGSGQDNISYSSMDYHIAKGGNTNYKMGYESKEVNKPSKEQTGSLCRALSTRMDPEQLKILGNEDYKNGRFAEALALYDAAIAIDPNKASYRSNRSAALTALGRVLEAVFECREAIRIESHYQRAHNRLGKLHFRLGETDKALYHYKQAGPEVDPDEVAKVKTLQVHLNKCTEARRLGDWNTLIIETKNAISSGADSAPSIYALQAEALLKLRRHQDADKVMSKCPNFDVDECTKFFGPIGNANLLVTRAQVDIASGRFEEALEAAQRAARLDSNNREANKVLRKVRAVTAARARGNELFKTSKFSDACVAYGEGLEHDPYNSLLLCNRAACRSKLGQFEKAVEDCNAALNLRPSYSKARLRRADCNAKLERWEASIQDYEILLRETPEDEEVNRALLEAQAQIKKQQGE* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03847 579 SMART tpr_5 458 491 IPR019734 GO:0005515
Rops11g03847 579 SMART tpr_5 492 525 IPR019734 GO:0005515
Rops11g03847 579 SMART tpr_5 258 291 IPR019734 GO:0005515
Rops11g03847 579 SMART tpr_5 224 257 IPR019734 GO:0005515
Rops11g03847 579 SMART tpr_5 292 326 IPR019734 GO:0005515
Rops11g03847 579 SMART tpr_5 526 559 IPR019734 GO:0005515
Rops11g03847 579 SMART tpr_5 412 445 IPR019734 GO:0005515
Rops11g03847 579 Coils Coil 532 552 - -
Rops11g03847 579 ProSiteProfiles TPR repeat profile. 224 257 IPR019734 GO:0005515
Rops11g03847 579 Gene3D Tetratricopeptide repeat domain 222 578 IPR011990 GO:0005515
Rops11g03847 579 SUPERFAMILY TPR-like 224 448 IPR011990 GO:0005515
Rops11g03847 579 Pfam TPR repeat 231 272 - -
Rops11g03847 579 Pfam Tetratricopeptide repeat 294 319 IPR019734 GO:0005515
Rops11g03847 579 Pfam Tetratricopeptide repeat 494 525 IPR001440 GO:0005515
Rops11g03847 579 SUPERFAMILY TPR-like 459 576 IPR011990 GO:0005515
Rops11g03847 579 ProSiteProfiles TPR repeat profile. 412 445 IPR019734 GO:0005515
Rops11g03847 579 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 6 579 IPR044534 -
Rops11g03847 579 MobiDBLite consensus disorder prediction 61 123 - -
Rops11g03847 579 MobiDBLite consensus disorder prediction 61 96 - -
Rops11g03847 579 MobiDBLite consensus disorder prediction 104 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03847 Rops-Chr11 72300578 72303673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03847 306 568 Glycosyltransferase AT3G04240 24.653 6.58e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03847 - - gmx:100811282 804.283
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03847 11 72300578 72303673 Rops11g03847 11 72300578 72303673 ECH