Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03844 ATGTCTTCCCTTCAGCTGTTGAAACTAACTCAGCATGGCCAGAACTTTCTGGCTTCAAGGAGGAAAGCTTTACTACTTGCATCTGGTATCTTCATTGCTGGTGGAACAGCTGCATATATGCAATCAAGGTTTAGAGGTAATAAACACGATTTATTTGGCCATTGCAATGGACACAACAATGATAAAGAAGTCATGGAGGAGGAGGTCACGAACGGTGCTACTGCACCAAAAGATAAACAAAAGAAAGGGGGATTGAAGTCACTTCAAGTCCTTGCTACAATTCTTCTATCTCAGATGGGTCAATTAGGTGCAAGGGATCTTTTAGCTTTAGTTGGCATAGTGGTGCTGCGAACTGCTTTAAGCAACAGGCTAGCTAAAGTGCAAGGATTCCTATTTCGTGCTGCTTTTCTTCGACGTGTACCGTTGTTTTTTCGGTTAATTTCAGAAAATATTCTTTTGTGCTTCCTCTCATCAACCATTCATTCTACATCAAAGTACATGACAGGGACTTTGAGTCTGCATTTCAGGAAAATATTGACAAAGCTTATCCATTCCCACTATTTTGAGAACATGGTGTATTACAAAATATCACATGTGGATGGTCGGATAACTAACCCTGAGCAAAGGATTGCCAGTGATGTGCCAAAGTTCTGTTCGGAGTTGAGTGAAATTGTACAGGATGATCTAACAGCAGTGACTGATGGAATTCTATATACTTGGCGGCTGTGTTCGTATGCTAGCCCAAAATATGTCTTCTGGATATTGGCCTATGTACTCGGAGCTGGGGCCACAATCAGAAATTTCTCTCCTTCATTTGGGAAACTTATGTCCAGAGAGCAGCAACTGGAAGGAGAGTATCGACAGCTTCACTCACGATTAAGGACTCACTCAGAAAGTATAGCATTTTACGGTGGAGAGAGGAGAGAAGAAGCTCATATTCAACAGAAGTTTAAGACATTGGTTAGGCACATGAATAGAGTGCTGCATGACCATTGGTGGTTTGGCATGATTCAGGACTTTTTATTGAAGTACCTTGGTGCAACGGTTGCTGTTATTTTGATTATCGAACCTTTCTTTTCGGGCCATCTAAGGCCTGACAGTTCAACTTTAGGGCGTGCAGAGATGTTAAGCAATCTAAGATATCATACTAGTGTCATAATTTCATTATTTCAGTCTCTAGGAACTCTTTCTATCAGTGCAAGACGGCTCAATCGTCTCAGTGGGTATGCTGATCGCATTTATGAGTTAATGGCTGTATCAAGGGAGCTAAGCTTGGTGGATGAGAAATCTTCTCTACAAAGAAAAGGAAGTAGAAATTGCATAAGTGAAGCTAACTACATTGAATTTTCTGGTGTCAAGGTTGTGACCCCCACCGGTAATGTATTGGTGGATGATCTGACCCTCAAGGTTGAGCCAGGATCTAATCTTTTAATTACAGGTCCAAATGGCAGTGGAAAGAGCTCGCTTTTCAGGGTTCTTGGTGGTCTTTGGCCATTGATATCTGGACATATTGTGAAACCTGGCATTGGCTCTGATCTTAATAAGGAGATTTTTTATGTGCCACAAAGACCATACACTGCAGTAGGAACACTCCGTGATCAGTTAATTTATCCTCTAACTGCAGAGCAAGAGGTTGAACCACTCACAGACCATGGGATGGTGGAGCTATTGAAAAATGTTGACCTTGAATACCTGTTGGACCGTTACCCGCCTGAAAAAGAGGTAAACTGGGGAGATGAACTTTCATTGGGTGAGCAACAGAGATTGGGCATGGCCAGACTATTCTACCATAAGCCTAAATTTGCAATTCTTGATGAGTGCACGAGTGCTGTCACTACTGATATGGAAGAACGTTTTTGTGCTAAAGTTCGGGCCATGGGAACATCATGCATAACCATATCACATCGTCCAGCGTTGGTTGCATTCCATGATGTGGTTTTATCCTTAGATGGTGAAGGAGGATGGAGTGTTAGAAGGGAGAACTCTTCTACTGAAATGGGGATTGATACAATGAAGGCATCAGAAACAAAACGACAGAGTGATGCAAAAGCAGTTCAACGAGCATTTTCCATGAGCAAAAAGGATTCTGCATTCTCAAATTCAAAGGCACAGTCGTATATTGCAGAGGTGATATCTTCATCCCCAGCTATGAATCATGCTATGTTACCATCTGCTGTTCCCCAACTCCATGGTAATACAAGGGTATTGCCACTGAGGGTAGCTGCCATGTGCAAAGTATTGGTACCCACTGTACTTGACAAACAAGGTGCCCAACTGCTTGCTGTTGCTTTTCTTGTTGTCTCTAGAACATGGGTCTCAGATCGTATTGCATCACTAAATGGTACCACTGTGAAGTTTGTTTTGGAGCAGGATAAAGCTGCCTTTATGCGGTTAATTGGTATGAGTGTTCTTCAAAGTGCTGCATCTTCTTTCATTGCACCTTCTATAAGACACTTGACAGCCAGGCTGGCCCTTGGGTGGAGGATTCGTTTAACACAACATCTACTCAAGAGTTACTTGAGAAGAAATGCGTTCTACAAGGTTTTCCACATGGCAAGCAAAAATATTGACGCAGATCAGAGGATAACTCAAGATTTGGAGAAGTTAACAACAGACTTGTCTGGACTGGTCACTGGAATGGTAAAGCCATCTGTGGATATTTTGTGGTTCACATGGAGAATGAAGCTGTTAACTGGTCAGAGGGGAGTTGCTATACTCTATGCTTACATGTTACTTGGCCTGGGATTTTTAAGAACTGTTACTCCTGATTTTGGTGATTTGATGAGCCAAGAACAACAACTTGAAGGAACCTTTAGGTTCATGCATGAAAGACTCCGTGCTCATGCTGAATCTGTTGCTTTCTTTGGAGGTGGTGCTCGAGAAAAAGCTATGGTTGAATCAAGATTCAGAGAGCTTCTCACCCACTCCAAGTACCTTTTAAAAAAGAAGTGGCTCTTTGGTATACTGGATGATTTTATCACAAAGCAACTCCCTCATAATGTGACTTGGTTGCTGAGCATGTTGTATGCTATGGAGCATAAGGGAGACCGTGCATCAGTAAATACTCAGGGTGAGCTGGCACATGCATTGAGGTTCTTAGCATCTGTTGTTTCTCAAAGCTTTTTAGCTTTTGGTGACATTCTTGAATTGAATAAAAAGCTTGTAGAGCTTTCTGGTGGTATTAATCGGATTTTTGAGCTTGAAGAGTTCCTGGATGCAGCAGAGTCTGGGGACTTCATCAATCATGGTGCTAAACCTCAAGTGATGGATTATCATTCTAAAGATGTTATTTCCTATTCTAATGTTGATATTGTAACCCCTACTCAGAAGATGTTGGCCAGGGAGTTGACATGTGACGTTGAGCTTGGGGGAAGCCTGCTTGTCACTGGTCCCAATGGAAGTGGAAAAAGTTCAATTTTCAGAGTTCTTAGAGGACTTTGGCCAATTGCTAGTGGAAGACTCTCCAGACCATCTGAAGATGTGGATCAAGAGACTGGATCAGGTTGTGGCATCTTCTATGTTCCTCAGCGGCCATATACATGCTTGGGAACCCTGCGGGATCAAATTATATACCCCCTGTCCCGTGAGGAAGCAGAGTTTAGAGCATTGAAGATATATGGAAAAGGTTTAAAACATCCTGCCACTGGAAGTTTGTTGGACACACACTTGGAAGTTATCCTAGAGAATGTTCGGTTGAATTATCTTCTAGAAAGGGACAAAAATGGCTGGGATGCAAGTCTAAATTGGGAAGACATTCTCTCTCTTGGAGAACAGCAGAGGTTGGGCATGGCGCGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACCAATGCAACTAGTGTTGATGTCGAAGAACACCTATATGGGCTTGCGAAGAAAATGGGAATCACATTTGTTACTTCCTCACAACGTCCTGCTTTAATACCATTTCATTCCATGGAATTGCGGCTGATTGATGGTGAGGGTAATTGGGAACTTCGTTTGATCAAGCAATGA 4008 0.4242 MSSLQLLKLTQHGQNFLASRRKALLLASGIFIAGGTAAYMQSRFRGNKHDLFGHCNGHNNDKEVMEEEVTNGATAPKDKQKKGGLKSLQVLATILLSQMGQLGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFRLISENILLCFLSSTIHSTSKYMTGTLSLHFRKILTKLIHSHYFENMVYYKISHVDGRITNPEQRIASDVPKFCSELSEIVQDDLTAVTDGILYTWRLCSYASPKYVFWILAYVLGAGATIRNFSPSFGKLMSREQQLEGEYRQLHSRLRTHSESIAFYGGERREEAHIQQKFKTLVRHMNRVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFSGHLRPDSSTLGRAEMLSNLRYHTSVIISLFQSLGTLSISARRLNRLSGYADRIYELMAVSRELSLVDEKSSLQRKGSRNCISEANYIEFSGVKVVTPTGNVLVDDLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLISGHIVKPGIGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTAEQEVEPLTDHGMVELLKNVDLEYLLDRYPPEKEVNWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVRRENSSTEMGIDTMKASETKRQSDAKAVQRAFSMSKKDSAFSNSKAQSYIAEVISSSPAMNHAMLPSAVPQLHGNTRVLPLRVAAMCKVLVPTVLDKQGAQLLAVAFLVVSRTWVSDRIASLNGTTVKFVLEQDKAAFMRLIGMSVLQSAASSFIAPSIRHLTARLALGWRIRLTQHLLKSYLRRNAFYKVFHMASKNIDADQRITQDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKLLTGQRGVAILYAYMLLGLGFLRTVTPDFGDLMSQEQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMVESRFRELLTHSKYLLKKKWLFGILDDFITKQLPHNVTWLLSMLYAMEHKGDRASVNTQGELAHALRFLASVVSQSFLAFGDILELNKKLVELSGGINRIFELEEFLDAAESGDFINHGAKPQVMDYHSKDVISYSNVDIVTPTQKMLARELTCDVELGGSLLVTGPNGSGKSSIFRVLRGLWPIASGRLSRPSEDVDQETGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAEFRALKIYGKGLKHPATGSLLDTHLEVILENVRLNYLLERDKNGWDASLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEHLYGLAKKMGITFVTSSQRPALIPFHSMELRLIDGEGNWELRLIKQ* 1336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03844 1335 Pfam ABC transporter 1115 1281 IPR003439 GO:0005524
Rops11g03844 1335 SUPERFAMILY ABC transporter transmembrane region 759 1011 IPR036640 GO:0005524|GO:0016020
Rops11g03844 1335 Pfam ABC transporter 464 609 IPR003439 GO:0005524
Rops11g03844 1335 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1091 1333 IPR003439 GO:0005524
Rops11g03844 1335 ProSitePatterns ABC transporters family signature. 1253 1267 IPR017871 GO:0005524|GO:0016887
Rops11g03844 1335 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1090 1324 IPR027417 -
Rops11g03844 1335 CDD ABCD_peroxisomal_ALDP 447 655 - -
Rops11g03844 1335 ProSitePatterns ABC transporters family signature. 581 595 IPR017871 GO:0005524|GO:0016887
Rops11g03844 1335 SMART AAA_5 1122 1334 IPR003593 GO:0016887
Rops11g03844 1335 SMART AAA_5 472 651 IPR003593 GO:0016887
Rops11g03844 1335 Pfam ABC transporter transmembrane region 2 744 1009 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops11g03844 1335 Pfam ABC transporter transmembrane region 2 91 359 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops11g03844 1335 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 678 1330 - -
Rops11g03844 1335 CDD ABCD_peroxisomal_ALDP 1097 1328 - -
Rops11g03844 1335 SUPERFAMILY ABC transporter transmembrane region 141 417 IPR036640 GO:0005524|GO:0016020
Rops11g03844 1335 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 151 341 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops11g03844 1335 Gene3D ABC transporter type 1, transmembrane domain 104 418 IPR036640 GO:0005524|GO:0016020
Rops11g03844 1335 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 447 676 IPR003439 GO:0005524
Rops11g03844 1335 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 756 994 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops11g03844 1335 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 445 651 IPR027417 -
Rops11g03844 1335 Gene3D - 434 709 IPR027417 -
Rops11g03844 1335 Gene3D - 1090 1326 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03844 Rops-Chr11 72218061 72233347 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03844 76 665 Acyl Lipid Metabolism Gene Families AT4G39850 35.447 1.56e-107 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03844 K25819 - gmx:100813765 2399.78