Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03834 ATGGGTGCTGCGGGCTCCAAGCTCGAGAAAGCTCTTGGCGACCAATTCCCCGAAGGAGAACGTTACTTTGGCCTTGAGAATTTCGGCAATACTTGTTACTGTAACAGCGTTTTGCAGGCTTTATACTTCTGTGTTCCATTTCGTGAACAATTGCTAGAGTATTATGGGAATAACAAAAGCATAACAGATGCAGAAGAAAATCTTTTGACTTGCTTAGCTGACCTATTTTCGCAGATAAGTTCACAGAAGAAGAAAACGGGTGTCATTGCTCCCAAACGATTTGTACAGAGGTTGAAAAAACAGAATGAACTCTTCCGCAGCTATATGCACCAGGATGCCCACGAATTCTTGAACTTTTTGTTAAATGAACTTGTTGACATTCTGGAGAAAGAGGCCCAGGCTGCAAACAACGATCAAGAAACGTCTCCACCTTTTGAAAAGATTGCTAATGGACTAAAGAATGGTCCAGCTAATGGTGCTAAAAAAGAGCCTTTAGTTACTTGGGTGCACAAAAATTTTCAGGGAATACTCACCAATGAGACAAGGTGCTTGCGATGTGAAACAGTAACAGCTAGGGATGAAACATTTTTTGACTTGAGCCTTGATATTGAACAAAACAGTTCAATTACAAGTTGTTTGAAAAATTTCAGTTCGACTGAGACGTTGAATGCCGAAGACAAATTTTTTTGTGACAAGTGCTGCAGCTTGCAAGAAGCCCAGAAGAGGATGAAGATAAAGAAACCGCCACACATCTTGGTCATCCATCTCAAGCGGTTTAAGTACATGGAACAGCTGGGTCGCTACAAGAAGCTGTCATACCGTGTTGTCTTCCCCCTTGAGCTCAAGTTGAGTGATACTGTTGAAGATGCAGACATCGAGTATTCTCTGTTTGCAGTAGTGGTCCATGTTGGGAGTGGGCCCAACCACGGGCATTATGTTAGCCTTGTGAAAAGCCATAACCACTGGTTATTTTTTGATGACGAAAATGTTGAGATGATTGATGAGTCTGCTGTTCAGACATTCTTTGGGTCATCGCAAGAATTTTCCAGTAATACAGACCATGGTTACATTTTGTTCTATGAGAGCATTGGCTCTGGTAACAAAACCTAG 1110 0.4189 MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYGNNKSITDAEENLLTCLADLFSQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEAQAANNDQETSPPFEKIANGLKNGPANGAKKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYMEQLGRYKKLSYRVVFPLELKLSDTVEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSSQEFSSNTDHGYILFYESIGSGNKT* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03834 369 CDD Peptidase_C19G 24 361 - -
Rops11g03834 369 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 294 312 IPR018200 GO:0004843|GO:0006511
Rops11g03834 369 FunFam Ubiquitin carboxyl-terminal hydrolase 3 5 362 - -
Rops11g03834 369 Pfam Ubiquitin carboxyl-terminal hydrolase 23 360 IPR001394 GO:0004843|GO:0016579
Rops11g03834 369 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 24 363 - -
Rops11g03834 369 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 24 39 IPR018200 GO:0004843|GO:0006511
Rops11g03834 369 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 23 363 IPR028889 -
Rops11g03834 369 SUPERFAMILY Cysteine proteinases 21 362 IPR038765 -
Rops11g03834 369 Gene3D Cysteine proteinases 5 362 - -
Rops11g03834 369 MobiDBLite consensus disorder prediction 135 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03834 Rops-Chr11 72138228 72148741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03834 24 334 Miscellaneous Gene Families AT4G31670 26.646 7.57e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03834 K11842 - gmx:100305765 727.628