Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03812 ATGCATAAATTGAACGCCAATTCAGAAACAAATGGCATTATTACTTTCATGAGATTGATTAATCATGTTTTGAGAGAATTTCTAGGAAGAGAAAGATTGTATGCTAATTTGGAAAAATGTACATTCTGCAAAGATCATGTGATTTTTCTAGGATTTGTTGTTAATTCTAGTGGAGTGCATGTTGATCAAGAGAAAATAAAAGCAATTCAAGAGCCGCCAACTCCAAATAATTGGGGTGAAAAACAAGAAAAGGCTTTTGCTGCTTTAAAAGAAAAGTTAACTAATGCTCTTGTTCTTGCTTTGCCTAATTTTGCTAAATCCTTTAAGCTTGAATGTGATGCATCTGGGGGATGCAACAACTCCGGCGGAAACTGTGATTCTGAAATGGCTTTCTGGACAAATTTCCCATTGAAAGCCGACAAGTTCCTAAGGAGAAGAAGCAAGTCCTTCGAGATGGCCCGTACAAAGCAAACTGCTCGTAAGTCAACCGGTGGAAAAGCTCCCAGGAAGCAGCTTGCCACCAAGGCTGCACGTAAGTCAGCACCAACTACTGGTGGTGTGAAGAAGCCACATCGTTATCGTCCTGGTACTGTTGCTCTTCGTGAGATTAGGAAATACCAGAAGAGTACTGAGCTCCTGATCAGGAAACTCCCTTTCCAGAGGTTGGTTCGTGAAATTGCTCAGGACTTCAAGACGGACCTCCGTTTCCAGAGTCATGCTGTACTTGCATTGCAAGAAGCTGCTGAGGCATACCTTGTTGGGCTCTTTGAGGACACCAACTTGTGTGCCATTCATGCAAAGCGTGTTACTATTATGCCGAAGGATATTCAGTTGGCAAGGAGGATTCGTGGTGAGCGTGCTTGA 864 0.4259 MHKLNANSETNGIITFMRLINHVLREFLGRERLYANLEKCTFCKDHVIFLGFVVNSSGVHVDQEKIKAIQEPPTPNNWGEKQEKAFAALKEKLTNALVLALPNFAKSFKLECDASGGCNNSGGNCDSEMAFWTNFPLKADKFLRRRSKSFEMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03812 287 Pfam RNase H-like domain found in reverse transcriptase 78 116 IPR041577 -
Rops11g03812 287 SUPERFAMILY Histone-fold 153 284 IPR009072 GO:0046982
Rops11g03812 287 Coils Coil 285 287 - -
Rops11g03812 287 SUPERFAMILY DNA/RNA polymerases 11 118 IPR043502 -
Rops11g03812 287 FunFam Histone H3 153 201 - -
Rops11g03812 287 PANTHER HISTONE H3 152 285 IPR000164 GO:0000786|GO:0003677|GO:0030527
Rops11g03812 287 Gene3D Histone, subunit A 153 287 IPR009072 GO:0046982
Rops11g03812 287 PRINTS Histone H3 signature 265 286 IPR000164 GO:0000786|GO:0003677|GO:0030527
Rops11g03812 287 PRINTS Histone H3 signature 154 168 IPR000164 GO:0000786|GO:0003677|GO:0030527
Rops11g03812 287 PRINTS Histone H3 signature 231 249 IPR000164 GO:0000786|GO:0003677|GO:0030527
Rops11g03812 287 PRINTS Histone H3 signature 168 182 IPR000164 GO:0000786|GO:0003677|GO:0030527
Rops11g03812 287 PRINTS Histone H3 signature 209 226 IPR000164 GO:0000786|GO:0003677|GO:0030527
Rops11g03812 287 PRINTS Histone H3 signature 185 206 IPR000164 GO:0000786|GO:0003677|GO:0030527
Rops11g03812 287 PRINTS Histone H3 signature 249 265 IPR000164 GO:0000786|GO:0003677|GO:0030527
Rops11g03812 287 SMART h35 185 287 IPR000164 GO:0000786|GO:0003677|GO:0030527
Rops11g03812 287 ProSitePatterns Histone H3 signature 2. 218 226 IPR000164 GO:0000786|GO:0003677|GO:0030527
Rops11g03812 287 FunFam Histone H3.3 204 287 - -
Rops11g03812 287 ProSitePatterns Histone H3 signature 1. 166 172 IPR000164 GO:0000786|GO:0003677|GO:0030527
Rops11g03812 287 MobiDBLite consensus disorder prediction 151 192 - -
Rops11g03812 287 Gene3D - 14 60 IPR043128 -
Rops11g03812 287 Pfam Core histone H2A/H2B/H3/H4 152 283 IPR007125 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03812 Rops-Chr11 71876153 71885460 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03812 K11253 - gmx:100783277 276.944