Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03704 ATGTCTCAGGTTGATAACAGAAATTCTTCAGCTGCTAAACGGGCTAGGACTGATGGTAGTCGTAGGGAAGATGATTGGACATGTCCTAGCTGTGGCAATGTCAATTTCTCGTTCAGGACAACCTGCAATATGCGTAATTGCACCCAACCAAGGCCAGCGGATCATAACTCGAAATCTGCTGCCAAGCCTCTACAAGCTCCACAGGGTTTTTCATCCTCAGCTCCTTATTTAGGTTCTAATACTCCCTCTTCAATATATCTTGGTGTCCCACCGTATGGGTCTTCTCTATTCAATGGATCATCTATTCCTCCCTATGATGTTCCATTTTCTGGAGGGGCCGCATACCACTACAATTATGGAAGTCGCCTTTCTGCTGGCAGTCCTTATAGACCATTGCATTTATCTGGACCAGCACCCTACACAAGTGGATCCATGGTGGGAAATGGTGGGATCTATGGCATGCCCCAGCTATTGGATCACTATGGTCTGGGTGTCCCTATTGGACCTGGAACTATGGGTGCCAGGCCAGGATTTTTTCGTGATGATAAGTCTCAGAAAAAAGGTGCAGATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGTAATGTCAATTTCTCATTCAGAACTGTCTGCAACATGAGAAAGTGCAACACACCCAAGCCTGGATCCCAGGCCTCAAAGTCTGACAAAAATTCTAAGCAAAAGATGCCTGAGGGAAGCTGGAAGTGCGAAAAATGTAACAACATAAACTATCCATTCAGAACCAAGTGCAACAGACAGAACTGTGGTGCTGACAAGCCAGCTGAGTCGGAAAAATCTCTTTCACCAGCTCCAGATCAAAATGATCAGTGA 858 0.4569 MSQVDNRNSSAAKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKSAAKPLQAPQGFSSSAPYLGSNTPSSIYLGVPPYGSSLFNGSSIPPYDVPFSGGAAYHYNYGSRLSAGSPYRPLHLSGPAPYTSGSMVGNGGIYGMPQLLDHYGLGVPIGPGTMGARPGFFRDDKSQKKGADATRDNDWTCPKCGNVNFSFRTVCNMRKCNTPKPGSQASKSDKNSKQKMPEGSWKCEKCNNINYPFRTKCNRQNCGADKPAESEKSLSPAPDQNDQ* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03704 285 SUPERFAMILY Ran binding protein zinc finger-like 188 225 IPR036443 -
Rops11g03704 285 FunFam ranBP2-type zinc finger protein At1g67325-like 15 54 - -
Rops11g03704 285 SUPERFAMILY Ran binding protein zinc finger-like 233 270 IPR036443 -
Rops11g03704 285 MobiDBLite consensus disorder prediction 220 248 - -
Rops11g03704 285 SMART zf_4 241 267 IPR001876 -
Rops11g03704 285 SMART zf_4 24 50 IPR001876 -
Rops11g03704 285 SMART zf_4 195 221 IPR001876 -
Rops11g03704 285 MobiDBLite consensus disorder prediction 50 73 - -
Rops11g03704 285 Gene3D - 14 54 - -
Rops11g03704 285 Gene3D - 228 271 - -
Rops11g03704 285 Gene3D - 187 225 - -
Rops11g03704 285 MobiDBLite consensus disorder prediction 11 25 - -
Rops11g03704 285 Pfam Zn-finger in Ran binding protein and others 194 223 IPR001876 -
Rops11g03704 285 Pfam Zn-finger in Ran binding protein and others 239 269 IPR001876 -
Rops11g03704 285 Pfam Zn-finger in Ran binding protein and others 22 44 IPR001876 -
Rops11g03704 285 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 168 229 - -
Rops11g03704 285 MobiDBLite consensus disorder prediction 1 25 - -
Rops11g03704 285 MobiDBLite consensus disorder prediction 265 285 - -
Rops11g03704 285 SUPERFAMILY Ran binding protein zinc finger-like 17 54 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03704 Rops-Chr11 70616785 70621613 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03704 180 272 EF-hand Containing Proteins AT1G55040 32.258 6.63e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03704 - - gmx:100796535 583.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03704 11 70616785 70621613 Rops11g03704 11 70616785 70621613 ECH