Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03686 ATGGCCCCTCCCAAAGTTCTCATGGTAGCAGAGAAGCCTAGCATCGCTCTGTCTATTGCCTCTGTTCTCTCCCGCGGCCAGATGTTTACAAGAAAGGGAAGCACAGAAGTTCATGAATTTGAGGGGAAGTTTCTTGGATTGCCCGCACGATTTAAAGTGACATCAGTTATTGGGCATGTGTTCAGTGTAGATTTTCCTGGTAAATATCAAGATTGGACAGCCACAGATCCATTAGACCTTTTTGAAGCTCAGGTTATAAAGAATGAATCAAACCCAAAGGCACATATTTGTAGACATTTAAATCAAGAAGCTCGTGGATGTCATTATTTGGTATTGTGGTTGGATTGTGATCGTGAAGGAGAAAACATATGTTTTGAGGTTATGGAATCAACTGGTTTCAATATAAACGATGCTTATCGTGCACGATTTTCTTCTGTTACTGAGAAAGATGTCCTGAAGGCTCTAGACAACCTTGTCAGACCCAACATGGATGAGGCCCTGGCTGTAGATGCTAGGCAAGAGATAGATTTGAAAGTTGGAGTTGCCTTTACTCGATTTCAGACAAGTTATTTCCAGGGAAAATATGGGAACCTAGATTCTAGAGTCATCTCCTATGGACCGTGTCAAACTCCCACTTTAGGATTTTGTGTGCAGCGATATTTGCAAATAAATACTTTCAAGCCCGAAAAGTTTTGGAGTTTGCACCCTTACATAATTCAAAATGGCTATGAAATTCAGCTTGAATGGCAACGTGGCAGATTGTTTGACATAAATGTTGCTATGATGTTTCAAAATCTGGTTGCCGAAGATGGACTTTTGGAAGTGACTGAAGCATCAGAAAAACAGGAAACCAAAAGTCGCCCTGTTGCTCTAAACACAGTGAATCTTCTGAAGGTTGCTTCAAGTGCTCTAGGATTTGGTCCTCAGATGGCTATGCAACTAGCTGAACGGTTGTATACTCAAGGCTTCATCAGCTATCCACGCACAGAAAGCACAGCATACCCTCCTTCATTTGACTTTAGTGGTGCACTCTCTGCACTAACAAATAATCCAACTTGGGGGAATTATGTAGAAGGGCTGATTACCAATGGTTATCAGAAACCTCGATTGGGAACAGATGCAGGCGATCATCCTCCCATTACTCCAATGAGATCTGCAGCAGAGGATATGCTAGGCAATGATGCTTGGAAGCTGTACCAATATATTTGTCAACACTTCATAGGGACAGTGTCTCCGGACTGCAAGTATTTAAGGAGAAAGGTTGAGTTTTTAATTGGTGGAGAGTCCTTTCATTGTACAGGGCAGCATGTTATCACCAAAGGATTTACGGCTATTATGCCTTGGTTGGCTGTAAATGATAAAAATATTCCATCATTTATAAAAGGGCAGAAAATAGAAGTATCAAAAGTGGAGGTCTATGAGGGGAATACCACACCTCCAGATTATCTTACTGAAAGTGAGCTGATCTCCCTGATGGAGAAGAATGGAATTGGAACAGATGCATCAATTGCTGTACATATTAATAACATATGTGAGCGGAACTATGTGCAGGTACAAGCAGGCAGGAAGCTTGTCCCAACCACGTTAGGTATAACTTTAATAAGAGGATATCAATCAATCGATCCAGACCTCTGCCTGCCTGATATCCGTAGCTTCATTGAGCAACAAATTACTCTTATTGCTATGGGTCAGGCAGATCATCATCGTGTAGTGCTGCATGTTATCCAACAATTCAAGCAGAAGTTTTGTTACTTTGTCAAGAAGATTGAAGCTATGGATGCATTATTTGAAGCACAATTTTCTACACTTATCGATTCAGGGCGTATTCTGAGTAAATGTGGTAAATGCTTGAGGTATATGAAGTACATTTCTACTCAGCCATCACGTTTGTATTGTGGTACATGTGAGGAGGTTTATTATCTTCCACAGAAGGGCACAATCAAGCTGTACAAGGAATTGTCTTGTCCTCTAGACAATTTTGAGCTTTTGATCTGCTCCATGCCTGGCCCAGAGGGTAAATCATTCCCACTATGCCCATACTGCTACAGCAATCCCCCATTTGAGGGTATTGAAGCACTCATCAATACGGCAAAAACTAGTACTTCTGGCAAGATTGGCAAGGGAGCTGGCATGCCATGCAACCTTTGTCCCCATCCCACTTGCCCAAATTCTCTGGTTTCCCAGGGTGTATGTGCTTGCCCAGAGTGCAGTGGGACACTTGTCTTAGACCCAGTAAGTGCTCCCAAATGGCGACTTTGTTGCAATATGTGCAATTGCCTGGTTTTTCTTCCACAGGGTGCTCATAGAATCTCCACAACTAAAGAACGGTGCCCTGAATGTGACTCTTCAATCATAGAAGTGGACTTCAATAAGAAAACAACTCCTCTGGAAGATGGGTCTACCTTGCACCGTGGTTGCATTCTTTGTGATGAGTTACTACATTCCCTTGTGGAGATGAAATATGGGAGAGGCTTCAAGCATATGAGATCACGAGGAAGAGGAAGAGGAGCAAGAAAAGGCGGATATAGGGGCAGAGGACGTGGGGGTGGAAAAATGATGGATCCTAAAATGAGTTTCCGAGATTTCTAA 2589 0.4249 MAPPKVLMVAEKPSIALSIASVLSRGQMFTRKGSTEVHEFEGKFLGLPARFKVTSVIGHVFSVDFPGKYQDWTATDPLDLFEAQVIKNESNPKAHICRHLNQEARGCHYLVLWLDCDREGENICFEVMESTGFNINDAYRARFSSVTEKDVLKALDNLVRPNMDEALAVDARQEIDLKVGVAFTRFQTSYFQGKYGNLDSRVISYGPCQTPTLGFCVQRYLQINTFKPEKFWSLHPYIIQNGYEIQLEWQRGRLFDINVAMMFQNLVAEDGLLEVTEASEKQETKSRPVALNTVNLLKVASSALGFGPQMAMQLAERLYTQGFISYPRTESTAYPPSFDFSGALSALTNNPTWGNYVEGLITNGYQKPRLGTDAGDHPPITPMRSAAEDMLGNDAWKLYQYICQHFIGTVSPDCKYLRRKVEFLIGGESFHCTGQHVITKGFTAIMPWLAVNDKNIPSFIKGQKIEVSKVEVYEGNTTPPDYLTESELISLMEKNGIGTDASIAVHINNICERNYVQVQAGRKLVPTTLGITLIRGYQSIDPDLCLPDIRSFIEQQITLIAMGQADHHRVVLHVIQQFKQKFCYFVKKIEAMDALFEAQFSTLIDSGRILSKCGKCLRYMKYISTQPSRLYCGTCEEVYYLPQKGTIKLYKELSCPLDNFELLICSMPGPEGKSFPLCPYCYSNPPFEGIEALINTAKTSTSGKIGKGAGMPCNLCPHPTCPNSLVSQGVCACPECSGTLVLDPVSAPKWRLCCNMCNCLVFLPQGAHRISTTKERCPECDSSIIEVDFNKKTTPLEDGSTLHRGCILCDELLHSLVEMKYGRGFKHMRSRGRGRGARKGGYRGRGRGGGKMMDPKMSFRDF* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03686 862 SMART toprim5 5 136 IPR006171 -
Rops11g03686 862 SMART topIaneu2 279 534 IPR003602 GO:0003677|GO:0003916|GO:0006265
Rops11g03686 862 Gene3D Topoisomerase I, domain 3 227 480 IPR013825 -
Rops11g03686 862 SMART topIban2 137 233 IPR003601 GO:0003677|GO:0003916|GO:0006265
Rops11g03686 862 Gene3D Topoisomerase I, domain 2 168 582 IPR013824 -
Rops11g03686 862 PANTHER PROKARYOTIC DNA TOPOISOMERASE 5 819 IPR000380 GO:0003677|GO:0003917|GO:0006265
Rops11g03686 862 Pfam Toprim domain 6 145 IPR006171 -
Rops11g03686 862 Pfam DNA topoisomerase 161 571 IPR013497 GO:0003677|GO:0003916|GO:0006265
Rops11g03686 862 SUPERFAMILY Prokaryotic type I DNA topoisomerase 5 622 IPR023405 -
Rops11g03686 862 Gene3D - 2 161 - -
Rops11g03686 862 FunFam DNA topoisomerase 287 412 - -
Rops11g03686 862 ProSiteProfiles Toprim domain profile. 5 148 IPR006171 -
Rops11g03686 862 MobiDBLite consensus disorder prediction 828 862 - -
Rops11g03686 862 MobiDBLite consensus disorder prediction 828 845 - -
Rops11g03686 862 FunFam DNA topoisomerase 3 161 - -
Rops11g03686 862 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 316 330 IPR023406 GO:0003917
Rops11g03686 862 CDD TOP1Ac 163 582 IPR013497 GO:0003677|GO:0003916|GO:0006265
Rops11g03686 862 CDD TOPRIM_TopoIA_TopoIII 5 158 IPR034144 -
Rops11g03686 862 Gene3D Topoisomerase I, domain 4 287 412 IPR013826 -
Rops11g03686 862 PRINTS Prokaryotic DNA topoisomerase I signature 110 123 IPR013497 GO:0003677|GO:0003916|GO:0006265
Rops11g03686 862 PRINTS Prokaryotic DNA topoisomerase I signature 203 221 IPR013497 GO:0003677|GO:0003916|GO:0006265
Rops11g03686 862 PRINTS Prokaryotic DNA topoisomerase I signature 398 414 IPR013497 GO:0003677|GO:0003916|GO:0006265
Rops11g03686 862 PRINTS Prokaryotic DNA topoisomerase I signature 321 330 IPR013497 GO:0003677|GO:0003916|GO:0006265
Rops11g03686 862 PRINTS Prokaryotic DNA topoisomerase I signature 496 510 IPR013497 GO:0003677|GO:0003916|GO:0006265
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03686 Rops-Chr11 70402929 70429061 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03686 K03165 - gmx:100791807 1623.99