Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03680 ATGTCGGAGATAGCAAGCACAGATCCAGAGGGTGTCGACGGAGTTCGCATGACATGGAACGTGTGGCCAAGGACCAAAGTGGAAGCCAGCAAGTGCGTCATCCCTCTCGCCGCCACCCTCTCCGTCATCCGTCCCCACCCTGACATCCCTCGTCTCCCTTACGCCCCTCTCCGTTGCAAAACCTGCACCTCTTCCCTCAACCCTTTCTCTCGTGTCGATTTCACCGCCAAGATCTGGATCTGCCCCTTCTGTTACCAACGCAACCATTTCCCCCCTCACTACTCTGCCATCTCCGAAACCAACCTCCCTGGTGAACTCTACCCTCAATACACCACCGTTGAATACGCTCTCCCTCATTCTAATCCCTCTTCTCCTTCTCTTTCACCTGTTTTCCTTTTCCTCCTTGATACTTGCCTTATTGAGGAGGAGATCCAGTTTCTCAAATCCGCTCTTCGTCAGGCTATTGGTCTTTTGCCTGATAATGCTCTTGTTGGGTTTGTTTCGTTTGGTACGCAGGTTCAGGTTCATGAATTGGGGTTCTCTGATATGTCCAAGGTTTATGTTTTCCGAGGTTCTAAGGACATTCCTAAAGATCAGATTTTGGAACAGCTTGGTCTTGCTGCTGTGAGGAGACCTCATAAGGGTGGTGGTGCTGGTGCTCCTTTCCCCAATTCTGGTGTCTCCAGATTCTTGTTGCCTGCATCTGATTGTGAATACACTCTTAATGCGCTGTTAGATGAATTGCAAACTGATCAATGGCCTGTTCCACCTGGCCGTCGTCCTGCTCGTTGCACCGGAGTTGCATTGAGTGTTGCTGCCGGATTGCTTAATGCTTGTGATCCTGGAACTGGGGCTAGAATCATAGCTTTGGTTGGGGGGCCTTGCACTGAAGGACCTGGCACGATTGTGTCAAAAGATCTATCAGATCCAGTGCGTTCTCATAAGGATCTTGACAAGGATGCAGCACCATACTTTAAGAAAGCAGTCAAATTTTATGAGAATATTGCAAAACAGCTGGTTAGCCAGGGTCACGTTTTAGATGTTTTTGCTTCAGCACTTGATCAGGTTGGAGTTGCAGAAATGAAAGTTGCAGTTGAAAAAACTGGTGGCCTTGTTGTCCTGGCTGAAAGTTTTGGTCATTCAGTCTTCAAGGACTCTTTTAAGCGTGTTTTTGAGGATGGAGAGCAATCTCTTGGTCTTTGTTTCAATGGAACCCTTGAGATAAATTGCTCGAAGGAAATCAAAATTCAGGGAATAATTGGACCTTGCACATCGATGGAAAAGAAAGGGCCTTCTGTTGCTGATACTGTTATAGGAGAGGGAAACACAACAGCATGGAAGATGTGTGGCCTTGACAAGAGTACTTGCTTGACTGTGATGTTTGATCTTTCATCAAGTGATCGTTCAAGCGCTCCAGGTGCTGTCAACCCACAACTGTACCTGCAGTTCCTTACAAGTTACCAAAGCCCAGATGGTCAATTAGTGCTTCGTGTCACAACAGTAACTAGAAGATGGGTAGATAGTTCTGTTAGCTCCGAGGAATTGGTTCAAGGATTTGACCAAGAAACTGCTGCAGTGGTAATGGCTAGATTTGCTTCTCTGAAAATGGAGACTGAGGAAACATTTGATGCCACACGGTGGTTGGACCGATACCTCATTCGCCTTTGTTCTAAGTTTGGTGACTACCGCAAGGATGACCCATCATCTTTTACATTAAACCCATCATTTTCACTGTTCCCTCAGTTTATGTTCAATCTGCGACGCTCACAGTTTGTACAGGTTTTTAACAACAGTCCAGATGAGACTGCATACTTCCGCATGTTGTTAAACAGGGAAAATATTAGTAATGCGGTTGTCATGATTCAGCCATCTCTGATATCATACTCATTTAATTCCCTGCCTGCACCAGCATTGTTAGATGTGGCTTCCATTGCTGCTGACCGGATTCTGTTGCTAGATTCATATTTTAGTGTGGTTATTTTTCATGGGATGACAATAGCTCAATGGCGCAACTTGGGATACCAGAACCAACCAGAACACCAGGCATTTGCACAACTATTACGAGCTCCGCATGATGATGCCCAAATGATAATTAGGGAACGGTTCCCTGTTCCTAGATTGGTAGTGTGTGATCAACATGGTTCCCAGGCTAGATTTTTATTAGCAAAGCTGAATCCCTCAGCAACATATAATAATGCACACGAGATGGCTGCTGGTTCAGATGTAATATTTACTGATGATGTGAGCCTTCAAGTTTTCTTTGAGCATCTGCAAAGGCTGGCTGTCCAATCTTGA 2295 0.4575 MSEIASTDPEGVDGVRMTWNVWPRTKVEASKCVIPLAATLSVIRPHPDIPRLPYAPLRCKTCTSSLNPFSRVDFTAKIWICPFCYQRNHFPPHYSAISETNLPGELYPQYTTVEYALPHSNPSSPSLSPVFLFLLDTCLIEEEIQFLKSALRQAIGLLPDNALVGFVSFGTQVQVHELGFSDMSKVYVFRGSKDIPKDQILEQLGLAAVRRPHKGGGAGAPFPNSGVSRFLLPASDCEYTLNALLDELQTDQWPVPPGRRPARCTGVALSVAAGLLNACDPGTGARIIALVGGPCTEGPGTIVSKDLSDPVRSHKDLDKDAAPYFKKAVKFYENIAKQLVSQGHVLDVFASALDQVGVAEMKVAVEKTGGLVVLAESFGHSVFKDSFKRVFEDGEQSLGLCFNGTLEINCSKEIKIQGIIGPCTSMEKKGPSVADTVIGEGNTTAWKMCGLDKSTCLTVMFDLSSSDRSSAPGAVNPQLYLQFLTSYQSPDGQLVLRVTTVTRRWVDSSVSSEELVQGFDQETAAVVMARFASLKMETEETFDATRWLDRYLIRLCSKFGDYRKDDPSSFTLNPSFSLFPQFMFNLRRSQFVQVFNNSPDETAYFRMLLNRENISNAVVMIQPSLISYSFNSLPAPALLDVASIAADRILLLDSYFSVVIFHGMTIAQWRNLGYQNQPEHQAFAQLLRAPHDDAQMIIRERFPVPRLVVCDQHGSQARFLLAKLNPSATYNNAHEMAAGSDVIFTDDVSLQVFFEHLQRLAVQS* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03680 764 FunFam Protein transport protein SEC23 517 638 - -
Rops11g03680 764 Gene3D von Willebrand factor, type A domain 128 400 IPR036465 -
Rops11g03680 764 Pfam Sec23/Sec24 zinc finger 56 94 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Rops11g03680 764 Pfam Gelsolin repeat 632 720 IPR007123 -
Rops11g03680 764 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 7 763 IPR037364 -
Rops11g03680 764 CDD Sec23_C 612 732 IPR037550 GO:0030127|GO:0090114
Rops11g03680 764 Gene3D - 10 503 - -
Rops11g03680 764 Pfam Sec23/Sec24 trunk domain 128 391 IPR006896 GO:0006886|GO:0006888|GO:0030127
Rops11g03680 764 SUPERFAMILY vWA-like 129 392 IPR036465 -
Rops11g03680 764 Gene3D Severin 622 726 IPR029006 -
Rops11g03680 764 Pfam Sec23/Sec24 beta-sandwich domain 402 506 IPR012990 -
Rops11g03680 764 FunFam Protein transport protein SEC23 128 401 - -
Rops11g03680 764 SUPERFAMILY Helical domain of Sec23/24 520 622 IPR036175 GO:0006886|GO:0006888|GO:0030127
Rops11g03680 764 SUPERFAMILY beta-sandwich domain of Sec23/24 8 519 - -
Rops11g03680 764 SUPERFAMILY Zn-finger domain of Sec23/24 47 119 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Rops11g03680 764 Gene3D - 53 112 - -
Rops11g03680 764 Pfam Sec23/Sec24 helical domain 520 617 IPR006900 GO:0006886|GO:0006888|GO:0030127
Rops11g03680 764 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 623 763 IPR036180 -
Rops11g03680 764 Gene3D Sec23/Sec24 helical domain 517 761 - -
Rops11g03680 764 FunFam Protein transport protein SEC23 53 112 - -
Rops11g03680 764 FunFam Protein transport protein SEC23 622 726 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03680 Rops-Chr11 70309833 70316007 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03680 K14006 - gmx:100813940 1400.96