Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03678 ATGGAGAATGTACTGACTCAGAGTCGCACCCACTTGCACCTAGTATTGAACCCCGTTTGCAGAGGGAGGAAGAGCAGCAACAGCATCTTCAATAAACCCTTTGCAAAATTCCCATCACTCACCACACAAATTGGGCATGCCTCTTTCGAACCATTGCCACCACTCACTGATACTGTTTCAGACTCAAAGCATAGAACCCTTCTGGTTGAGACTTACCATGTCCATAACAGCCTCAGAATCTTACTCGCAAAGCTTGAGAAGGAAGATTCATGCCCACTTCACATACTCAGAGAAGATGGAGATTGGTCCAAAGACCATTTCTGGGCCGTTGTTAGGTTCCTTAAAAATGCCTCGAGGTTCTCTGAAATCCTTCAGGTGTTTGATATGTGGAAGAACATTGAGACATCACGGATTAATGAGTTCAACTATAACAAAATCATAAGCTTGTTATGTGAAGAAGGAACGATGGAAGATGCTTTATCTGCATTGCAGGAGATAAAAATTCAAGGTCTCAAGCCTTCTTTAGACACTTATAATCCAATAATTCATGGATTCTCCAAAGAAGGTAAATTCAACGAGGCGTTACAATTTTTTGATGAGATGAAAGAATTTGGTTTAGAGCCGGACACAGAAACCTATGATGGTTTAATTCGAGCTTATGGGAGATTTCAAATGTATGATGAGATGGATAAGTGTGTGAAAAAAATGGAGTTGGATGGATGTTCACCTGATCACATCACTTATAATATACTTATCCAGGAGTACGCACATGGTGGGTTACTCCAAAGAATACAAAAGCTATATCAAAGAATGATTTCAAAAAGAATGCATTTACAATCTTCTACTTTAGTTGCAATGTTAGAGGCTTATGCCAAATTTGGGATGGTTGAAAAAATGGAAAAATTTTATAGAAAACTTTTGAACTCAAGAGCATGTCTAGAGGATGATTTGATTAGAAAATTGGCTGAAGTTTATATCAAGAGCTACATGTTTTCTAGATTGGACGACTTGGGACTAGAATTGCGTTCAGCATTTGGAGAGACTGATCTTGTGTGGTATCTCCGTCTCCTTTCTCATGCATGTCTTTTGAGTCGAAAAGGTATGGTTATAATTCTTCGAGAAATGCGAGATGCCAAGGTTCATTGGAATGTTACTGTTGCAAATATCATCATGCTGGCTTATGTGAAGATGAAAGATTTCAAGCATTTAAGAATTTTTCTCTCTCAATTGCCAATCTATGGGGTGAAGCCTGATATAATCACTATAGGAATTCTATTTGATGCAAATAGAATTGGTTTTGATGGTAGTGGAACTTTAGAATCATGGAGAAGAATGGGCTATCTTTACAGAATAGTAGAAATGAAAACAGATTCTCTGGTCCTTACTGCATTTGGGAAGGGTCATTTTCTTAAAAGATGCGAAGACGTGTACTCCTCCCTTCCCCCTCAGGCCAAAGAAAGAAAAACATGGACTTATTATGACCTCATTGCTTTATTGTCAAAACATATTGGTAGTAGTGACTGTATGAAACCAAAATGA 1539 0.3827 MENVLTQSRTHLHLVLNPVCRGRKSSNSIFNKPFAKFPSLTTQIGHASFEPLPPLTDTVSDSKHRTLLVETYHVHNSLRILLAKLEKEDSCPLHILREDGDWSKDHFWAVVRFLKNASRFSEILQVFDMWKNIETSRINEFNYNKIISLLCEEGTMEDALSALQEIKIQGLKPSLDTYNPIIHGFSKEGKFNEALQFFDEMKEFGLEPDTETYDGLIRAYGRFQMYDEMDKCVKKMELDGCSPDHITYNILIQEYAHGGLLQRIQKLYQRMISKRMHLQSSTLVAMLEAYAKFGMVEKMEKFYRKLLNSRACLEDDLIRKLAEVYIKSYMFSRLDDLGLELRSAFGETDLVWYLRLLSHACLLSRKGMVIILREMRDAKVHWNVTVANIIMLAYVKMKDFKHLRIFLSQLPIYGVKPDIITIGILFDANRIGFDGSGTLESWRRMGYLYRIVEMKTDSLVLTAFGKGHFLKRCEDVYSSLPPQAKERKTWTYYDLIALLSKHIGSSDCMKPK* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03678 512 PANTHER OS08G0520200 PROTEIN 39 503 - -
Rops11g03678 512 NCBIfam pentatricopeptide repeat 212 244 IPR002885 -
Rops11g03678 512 NCBIfam pentatricopeptide repeat 143 174 IPR002885 -
Rops11g03678 512 NCBIfam pentatricopeptide repeat 177 210 IPR002885 -
Rops11g03678 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 209 243 IPR002885 -
Rops11g03678 512 Pfam PPR repeat 283 307 IPR002885 -
Rops11g03678 512 Pfam PPR repeat 143 170 IPR002885 -
Rops11g03678 512 Pfam PPR repeat 246 275 IPR002885 -
Rops11g03678 512 Gene3D Tetratricopeptide repeat domain 221 333 IPR011990 GO:0005515
Rops11g03678 512 Gene3D Tetratricopeptide repeat domain 95 220 IPR011990 GO:0005515
Rops11g03678 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Rops11g03678 512 Gene3D Tetratricopeptide repeat domain 334 503 IPR011990 GO:0005515
Rops11g03678 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 278 IPR002885 -
Rops11g03678 512 Pfam PPR repeat family 177 220 IPR002885 -
Rops11g03678 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 173 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03678 119 445 Glycosyltransferase AT1G05670 22.523 1.66e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03678 - - gmx:100808924 791.571