Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03669 ATGTCATTCTCTCCGCATGCACATGCACTCCAATCTCAACTATGCTCCGTGGGACGTCAGAGCCCATTCCTGGCGAAGAAACTTCATGCTCAAATCATAAAAACTGGTCTGAACCAACATGACCCTCTCCCCAACACTCTGCTTGATGCATACGGTAAATGTGGTCTCCTCCAAGATGCACTTCAACTGTTCGACGCATTGCCCCACCGTGACCACATCTCATGGGCTTCCATCATCGCCGCCTGCAACCTCGCCAACCTTCCTCACCGAGCACTCTCCATTTCACGTTCCATTCTCCACGCAGGGTTGCACCCTGATCACTTCGTCTTCTCCACGCTCGTCAAGGCTTGTGCTAACTTGGGTCCTCTTCATGTAAAGCAAGGTAAACAAGTTCATGCTCGCTTTTTTCTCTCACCCTTCTCCGACGACGACGTCGTCAAGTCAACGCTGGTTGATATGTATGCGAAATTCGGGTTGCCCCATTATGGGCGTGCCGTTTTCGATTCGATTTCTTCCTTGAATTCCATTTCTTGGACTGCCATGATATCTGGGTATGCGCGGGGTGGACGAAAGTTTGAAGCTTTACGACTGTTTCGTCAATCTCCATATAAGAATCTGTTTGCTTGGACTGCTTTGATATCTGGGTTGGTGCAGAGTGGGAATGCAGTTGATGCGTTCAACATGTTTGTTAAAATGCGTCGTGAAGGGATTAATATAGCCGACCCGTTAGTTCTTTCCAGTGTGGTTGGTGCTTGTGCTAATTTAGCTGTTTGGGAGCTTGGAAAACAGATGCATGGTTTGGTCACAATCCTTGGCTATGAGTCATGCATCTTTATAAGCAATGCACTTGTAGACATGTACGCCAAATGTAGTGACCTTGTTGCTGCAAAATATATCTTCTGTCAGATGAGCAGAAAAGATGTAGTTTCTTGGACTTCAATAATTGTTGGCACTGCCCAGCATGGGCAAGCTAAGGAGGCATTGGTTTTGTATGATGACATGGTTTTGGCTGGGGTTAAGCCAAATGAGGTGACCTTTGTTGGGTTGATCTATGCCTGCAGTCATGTTGGTCTAGTTAGCAAGGGCCGGGCTTTGTTTAGGTCTATGGTTGAAGATTATGGAATTAAGCCCTCTCTGCAGCATTATACTTGTTTGTTGGATCTTTTTAGTCGGTCGGGGCATCTTGATGAGGCAGAGAATCTCATTAGAACAATGCCTGTCAACCCTGATGAACCTACTTGGGCTGCATTACTCAGTGCTTGTAAGCACCATGGTAACACCCAGATGGCAGTTAGGATCGCTGATCAGCTATTGAATTTAAAACCAGAAGATCCTTCCTCCTATATATTGTTATCTAATATATATGCCGGAGCTGGTATGTGGGAGAATGTCTCAAGGGTGAGGAAGTTAATGATGGTCAAGGAAGTTAAAAAGGAACCAGGTTATAGCTGCATTGACTTGGGAAAGGAAAGCTCTGTGTTTTATGCTGGAGAGACATCTCATCCAATGAAGGATGAGATTCTAGGTTTAATGAGGAAGTTAGATGCAGAGATTAGGAAAAGGGGCTATGTTCCTGATACTAGCTCAGTTTTACATGACATGGATCAACAAGAGAAAGAAAGACAACTTTTCTGGCATAGTGAGAGGTTGGCTGTGGCCTATGGGCTTCTTAAGGCTGTTCCAGGGACTATTATACGTATAGTGAAAAATCTTCGTGTTTGTGGAGATTGTCATACAGTTCTGAAGCTCATCAGCATTATAGCAAGTAGGGAAATTTATGTTCGAGATGCTAAAAGATATCACCATTTTAAGGATGGGAATTGTTCGTGCAATGACTTCTGGTGA 1845 0.4472 MSFSPHAHALQSQLCSVGRQSPFLAKKLHAQIIKTGLNQHDPLPNTLLDAYGKCGLLQDALQLFDALPHRDHISWASIIAACNLANLPHRALSISRSILHAGLHPDHFVFSTLVKACANLGPLHVKQGKQVHARFFLSPFSDDDVVKSTLVDMYAKFGLPHYGRAVFDSISSLNSISWTAMISGYARGGRKFEALRLFRQSPYKNLFAWTALISGLVQSGNAVDAFNMFVKMRREGINIADPLVLSSVVGACANLAVWELGKQMHGLVTILGYESCIFISNALVDMYAKCSDLVAAKYIFCQMSRKDVVSWTSIIVGTAQHGQAKEALVLYDDMVLAGVKPNEVTFVGLIYACSHVGLVSKGRALFRSMVEDYGIKPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSACKHHGNTQMAVRIADQLLNLKPEDPSSYILLSNIYAGAGMWENVSRVRKLMMVKEVKKEPGYSCIDLGKESSVFYAGETSHPMKDEILGLMRKLDAEIRKRGYVPDTSSVLHDMDQQEKERQLFWHSERLAVAYGLLKAVPGTIIRIVKNLRVCGDCHTVLKLISIIASREIYVRDAKRYHHFKDGNCSCNDFW* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03669 614 Pfam DYW family of nucleic acid deaminases 522 614 IPR032867 GO:0008270
Rops11g03669 614 Pfam PPR repeat 208 237 IPR002885 -
Rops11g03669 614 Pfam PPR repeat 45 66 IPR002885 -
Rops11g03669 614 Pfam PPR repeat 176 200 IPR002885 -
Rops11g03669 614 Pfam PPR repeat 382 405 IPR002885 -
Rops11g03669 614 Pfam E motif 424 485 IPR046848 -
Rops11g03669 614 FunFam Pentatricopeptide repeat-containing protein At4g14050, mitochondrial 7 133 - -
Rops11g03669 614 Pfam PPR repeat family 306 354 IPR002885 -
Rops11g03669 614 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 11 551 IPR046960 GO:0003723|GO:0009451
Rops11g03669 614 FunFam Pentatricopeptide (PPR) repeat-containing protein 371 533 - -
Rops11g03669 614 Gene3D Tetratricopeptide repeat domain 125 269 IPR011990 GO:0005515
Rops11g03669 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 378 412 IPR002885 -
Rops11g03669 614 NCBIfam pentatricopeptide repeat 176 200 IPR002885 -
Rops11g03669 614 NCBIfam pentatricopeptide repeat 344 378 IPR002885 -
Rops11g03669 614 NCBIfam pentatricopeptide repeat 208 237 IPR002885 -
Rops11g03669 614 NCBIfam pentatricopeptide repeat 309 343 IPR002885 -
Rops11g03669 614 Gene3D Tetratricopeptide repeat domain 4 124 IPR011990 GO:0005515
Rops11g03669 614 Gene3D Tetratricopeptide repeat domain 281 501 IPR011990 GO:0005515
Rops11g03669 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Rops11g03669 614 FunFam Pentatricopeptide repeat-containing protein mitochondrial 259 370 - -
Rops11g03669 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 204 IPR002885 -
Rops11g03669 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 239 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03669 Rops-Chr11 70225889 70228502 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03669 24 614 Glycoside Hydrolase AT3G49170 37.645 3.42e-133 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03669 - - gmx:100782048 1095.49