Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03656 ATGAGTACCGTTGACAAGATGTTAATCAAAGGAATCCGGAGCTTCGACCCGGAGAATAAGAACGTCATCACCTTCTTCAAACCCTTAACCCTAATCGTTGGTCCCAACGGTGCTGGCAAGACCACGATCATAGAGTGCTTGAAGCTTTCCTGCACTGGTGAGTTGCCTCCTAATGCCAGGTCTGGTCACAGCTTCATTCACGATCCCAAGGTTGCCGGAGAAACGGAAACCAAGGGACAGATTAAGCTCCGTTTCAAGACCGCCGCTGGTAAAGACGTGGTTTGCATTAGGTCCTTTCAGCTTACTCAAAAGGCCTCCAAGATGGAATACAAGGCTATTGAGAGTGTGCTTCAAACTATTAATCCTCACACTGGAGAGAAAGTGTGCCTTAGCTATAGATGTGCTGATATGGATCGAGAGATACCTGCGCTTATGGGTGTCTCAAAGGCCATTTTGGAAAATGTTATATTCGCTCATCAAGATGAAGCCAATTGGCCACTGCAGGATCCTTCCACCTTAAAGAAGAAGTTTGATGATATCTTTTCTGCAACGCGATACACAAAGGCACTGGAGGTCATAAAGAAACTTCACAGGGATCAAGCTCAAGAGATAAAGACTTACAAGCTAAAATTGGAAAATCTTCAAACTCTGAAAGATGCTGCTTATAAGCTTCGGGAAAGCATTGCACATGATGAGGAGAAAACAGCATCTTTAAAAGGTCAGGTACAACAGTTGGATGGAAGCATTCAAGATTTGGATGCTAAAATTCATCACACAGAAAAAACGTTGAAAGATTTGCGGAAGCTGCAGGAGCAGATAAAAACTAAAGATGCACAACGAAGCACTCTGTTTAAGGAACAACAGAGACAATATGCAGCTCTTGCTGAGGAGAATGAAGACACTGATGAAGAGTTGATGGAATGGAAGACCAAGTTTGAAGAAAGGATTGCAATTTTGCAAACAAAAATAAGCAAGTTGGAAAGAGAGATGAATGACAGTGACACTAAAAGTTCTTTCCTTAAGCAGACAATAGATGATTCCATCTGGGAGATTAGCAAGCTACAAACTGAAGCAGAAGCTCACATGCATTTGAAGAATGAACGCGATTCCTCCATTCAAAATCTTTTTGCTAGGTATAACTTAGGGTCTCTTCCAAAGTCACCCTTCAATGATGAGGTTGCTTCAAACCTATCTAATCGTGTAAAATCAAGGTTGAGGGATCTTGAGAAGGATCTCGAAGATAAAAAGCAAGCAAATGACAATGAACTCAAGATGGCATGGGAGTGCTACATGAATGCAAATGACAGTTGGAAAAATACTGAGGCTAAAAAACAAGCTAAGATAGAGATCAAGAGTGGCATTATAAAGCGCATTGAAGAGAAGAAAAATGAGCGTGATTCGTTTGAACTTCAAATATCTAATGTAAACTTCGCTCATATAGATGAAAGAGAGAGAAATTTGCAAATTGAGGTTGACAGGAAGACAAAGCAACTTGCTGAAAGAGAATTTGAACCAAATATACGTCAAATGCAAAGTGAGCTATTTAGTGTAGATCAAAAGATTAAGGCTGTCAATCGAGAGAAAGATATCATGGCTTCTGATTCAGAGGACAGAGTGAAGCTATCTCTTAAGAAGGCAGAGTCGGAGAATCAGAATAAGAAACATAAAAAGATAATTGATGACCAAAAGGATAAGATAAGAAGGGTGCTAAAGGGGAGGGTTCCTGCTGATAAGGATCTAAAGAAGGAAATTACACAAGCATTAAGGACTGCTGGAGCTGAATTTGATGACATGAATGCAAAGTACCGTGAAGCTGAGAAGGAAGTCAATCTGTTACAGATGAAAATACAAGAAGTTAATAGTAACCTATCCAAACACCACAAGGATTTGGAATCAAGAAAGAGATTTATTGAATCCAAGCTTCAGTCTTTGGATCCGCAGTGTCCTGGAATTGACTCTTATCTCAAAGTTTTAGAGTCATCCAAGGAGAAAAGAGATGTACAGAAAAGCAAATATAACATTGCTGATGGTATGCGACAAATGTTTGATCCTTTTGAAAGGGTTGCCAGAGCTCATCATGTTTGCCCTTGCTGTGAGCGCTCTTTCTCTGCTGAAGAAGAAGACACTTTTGTCAAGAAGCAAAGAGTGAAGGCTGCTAGTTCAGCTGAACATATGAAGGTTCTCGCTGTGGAGTCCTCAAATGCAGACTCTCATTATCAGCAGTTGGACAAGCTTCGTATGGTTTATGAAGAATATGTTAAACTTAGCAAGGAGACAATCCCTAATGCCGAAAAGGAACTCCAGCAACTCAAGGACGAGCTGGATCAAAAATCTGTGGCACTTGATGATGTTTTAGGTGTTTTAGCTCAAGTAAAGACTGACAAGGATTTGGTTGAGGCATTGGTGCAACCTGTTGAAAACGCTGACCGGCTTTTCCAAGAAATTCAAGCTTTGCAAAAGCAAGTTGAGGATTTAGAATATAAGGTTGATTTTCGAGGATCAGGAGTGAGGACTCTGGAAGAAATTCAATTGGAGCTTAACGCATTGCAGGGCACAAAGGACAATTTGCATACTGAATTAGAAAAGCTGAGGGAAGAACAGAGGTATATGGAGAATGATCTATCAAATATTCAAATACGGTGGCACACTCTAAGGGAGGAGAAAGCGAAAGCAGCTAACACATTGCAAGATGTTAAAAGATTAGAAGAAGAATTAGAACGTTTGACTGAAGAAAAGGCCCAAGTTGATCTTGATGAGAAGCATCTGACAGAAGCTCTTGGGCCTTTATCCAAGAAGAAAGATAAATTACTCGCTGACCATAATGAACTGAAAATTAGACTTAACCACGAGTATGAGGATCTGGTTGAACAAAAGAGAAGTTATCAGCAAGAAGCCGAAGCACTTTTTAAAATGACTTCTAAGATTAAAGAGTACTCTGATTTAAAGAAAGGAGACAGGTTGAAGGAACTGCAGGAAAAGAAATCTCTATCGGAATCTCAACTTCAAAGTCTTGAAACCAGGAAGCAGGAAATTTTAGCTGAACTGAACAAAAGTAAAGATTTGATGCGAAATCAAGATCAATTAAGAAGAAATATCGAAGACAACTTAATTTACAGGAAAACAAAGGCTGAAGTAGATGAGCTAGCGCGTGAAATTGAAACACTTGAAGAAAATATACTGAAGGTTGGTGGGGTTTCCACAATTGAAACTGAACTCCAGAAACTATCCCAGGAGAGGGAGAGGCTTCTTTCAGAGTTAAACAGATGCCATGGAACGATGTCTGTTTACCAGAGCAATATTTCCAAAAACAAGATTGATCTTAAACAGGCTCAGTACAAGGAAATAGATAAGCGATACTTTGACCAGCTTATCCAGCTTAAGACAACTGAAATGGCAAACAAGGACCTGGACAGATACTACAATGCACTTGATAAAGCACTGATGCGCTTCCACACAATGAAAATGGAAGAAATCAACAAAATTATAAGGGAATTGTGGCAACAGACTTATAGAGGACAGGATATAGACTACATCAGTATCCATTCAGATTCCGAAGGTGCTGGGACCCGATCCTACAGTTACAAGGTTGTCATGCAGACTGGTGATGCAGAGTTAGAAATGAGAGGAAGATGTAGTGCGGGGCAGAAGGTACTGGCATCTCTTATCATACGGTTGGCTTTAGCTGAAACATTTTGCCTCAATTGTGGGATACTTGCATTGGATGAACCAACCACTAACTTGGATGGACCAAATGCTGAAAGTCTGGCTGCTGCTCTCCTAAGGATCATGGAGGACAGGAAAGGCCAGGAAAATTTTCAGCTAATTGTAATTACTCATGATGAGCGTTTTGCTCAACTGATTGGTCAGCGCCAGCATGCAGAGAGATATTATCGAGTCACAAAAGATGACCATCAGCACAGTATAATCGAATCTCAGGAGATATTTGACTGA 3951 0.4037 MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNARSGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKASKMEYKAIESVLQTINPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFAHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHRDQAQEIKTYKLKLENLQTLKDAAYKLRESIAHDEEKTASLKGQVQQLDGSIQDLDAKIHHTEKTLKDLRKLQEQIKTKDAQRSTLFKEQQRQYAALAEENEDTDEELMEWKTKFEERIAILQTKISKLEREMNDSDTKSSFLKQTIDDSIWEISKLQTEAEAHMHLKNERDSSIQNLFARYNLGSLPKSPFNDEVASNLSNRVKSRLRDLEKDLEDKKQANDNELKMAWECYMNANDSWKNTEAKKQAKIEIKSGIIKRIEEKKNERDSFELQISNVNFAHIDERERNLQIEVDRKTKQLAEREFEPNIRQMQSELFSVDQKIKAVNREKDIMASDSEDRVKLSLKKAESENQNKKHKKIIDDQKDKIRRVLKGRVPADKDLKKEITQALRTAGAEFDDMNAKYREAEKEVNLLQMKIQEVNSNLSKHHKDLESRKRFIESKLQSLDPQCPGIDSYLKVLESSKEKRDVQKSKYNIADGMRQMFDPFERVARAHHVCPCCERSFSAEEEDTFVKKQRVKAASSAEHMKVLAVESSNADSHYQQLDKLRMVYEEYVKLSKETIPNAEKELQQLKDELDQKSVALDDVLGVLAQVKTDKDLVEALVQPVENADRLFQEIQALQKQVEDLEYKVDFRGSGVRTLEEIQLELNALQGTKDNLHTELEKLREEQRYMENDLSNIQIRWHTLREEKAKAANTLQDVKRLEEELERLTEEKAQVDLDEKHLTEALGPLSKKKDKLLADHNELKIRLNHEYEDLVEQKRSYQQEAEALFKMTSKIKEYSDLKKGDRLKELQEKKSLSESQLQSLETRKQEILAELNKSKDLMRNQDQLRRNIEDNLIYRKTKAEVDELAREIETLEENILKVGGVSTIETELQKLSQERERLLSELNRCHGTMSVYQSNISKNKIDLKQAQYKEIDKRYFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGAGTRSYSYKVVMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALLRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAERYYRVTKDDHQHSIIESQEIFD* 1317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03656 1316 Coils Coil 1038 1058 - -
Rops11g03656 1316 Coils Coil 398 425 - -
Rops11g03656 1316 Coils Coil 507 527 - -
Rops11g03656 1316 Coils Coil 937 971 - -
Rops11g03656 1316 Coils Coil 1065 1092 - -
Rops11g03656 1316 Coils Coil 839 880 - -
Rops11g03656 1316 PANTHER RAD50 1 1314 - -
Rops11g03656 1316 Coils Coil 808 828 - -
Rops11g03656 1316 Pfam AAA domain 7 219 IPR038729 GO:0006302|GO:0016887
Rops11g03656 1316 FunFam DNA repair protein RAD50 3 301 - -
Rops11g03656 1316 Coils Coil 545 565 - -
Rops11g03656 1316 Coils Coil 588 622 - -
Rops11g03656 1316 FunFam Os02g0497500 protein 1118 1315 - -
Rops11g03656 1316 Gene3D - 1021 1315 IPR027417 -
Rops11g03656 1316 Coils Coil 249 336 - -
Rops11g03656 1316 Pfam Rad50 zinc hook motif 688 724 IPR013134 -
Rops11g03656 1316 Coils Coil 987 1021 - -
Rops11g03656 1316 NCBIfam rad50 3 1310 IPR004584 GO:0000723|GO:0005634|GO:0006281|GO:0016887|GO:0030870
Rops11g03656 1316 Coils Coil 753 780 - -
Rops11g03656 1316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 298 IPR027417 -
Rops11g03656 1316 Coils Coil 884 925 - -
Rops11g03656 1316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 1286 IPR027417 -
Rops11g03656 1316 Coils Coil 197 217 - -
Rops11g03656 1316 Gene3D - 4 252 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03656 Rops-Chr11 70106032 70116961 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03656 K10866 - jre:109008437 2194.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03656 11 70106032 70116961 Rops11g03656 11 70106032 70116961 ECH