Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03644 ATGGATTTGGTGGAATTGGAGGCGGTTGAAGGCCTCCGGTGGACGTGGAATTCATGGCCGGCGGTTTCCAAATCGGAACTGATAATCCCTCTCAGCATCATGTGCACTCCCTTGATGCAAGTCACTGGCACTGAACTCCCCCTTCTCCCTTACGATCCACTCTTGTGCAGGCGATGCGGCGCCGTTTTGAACCCCTACGCTCGCCTTGACTACCAGTCACGCATATGGCACTGTCCCTTCTGTTCTCAAAGGAATCCCTTCCCTCGCTCCATCGCCGATACCAATCTCCCCGCCGAGCTCTTCCCCACCTACACCACCGTCGAATACTCTTCCCCTTCTTCTTCTTCCTCCTCTCTCCTTCATCCTCCTGTTTTTGTCTTCGTCGTCGATGTCTCCTCCTCCGACGATGAACTCCGTCTACTCAAGAATGAGCTCTTGCTTCTCCTCCATCACTTGCCTGACAACTCTCTCGTCGCTTTGATCACCTTCGATTCCATGGTGTATCTCCATGATCTTCGATATTCTCAATGTTCAAGGCTTTTCATCTTTCACGGAGATCGCTCACTTTCCTCCAATCAGTTCCTCAACATTAGCCGTCCCCATCAGGTGCATATTGGACAAACATCAGCCATTCCCAAGCAGGGATTTCTGTTGCCAATTTCAGAATGTGAGTTCAGTATCACTGCTGCTATTGAAGATATTCATTCTACCGCCAACTTCAGGAGCCGCAACCGCTCACCAAGGTGTACCGGAGCTGCTATTTTGGTTGCTCTTGGACTTTTAGAGTGTTGCCTCATAAATACCGGCTCCAGGATTATGGTCTTCACTTCTGGACCTGCTACTCTAGGACCGGGAATGGTTGTGGATTTTGATCTCCGGCAAAGCATGAGAACCCACCATGACATCTTCAATGGACGGGCAACACACCATGCAAAGTCTTGCACTTTTTACAAGCCTCTATCCAAGAGGCTGTCTGATGCATCTGTTGTTCTTGATTTGTTTGCTTGTTCCCTTAATCAAGTTGGAGCGGCTGAACTTAGAGAACCGGTTGAGAACTCGGGTGGATTTATGATTCTTGCTGACACTTTTGAATCGGATCAGTTCAGGAAATGTCTCAGGCACATATTCAAACGTGATGATGATGGCCATTTGAAAATGAATTTTGATGCAACCATTGAAGTAGTGACTACCAAAGATGTGAAAATCTGCGGAGCACTTGGTCCTTGTGTGTCTCTTAGAAAAAAGAACAGTTTGGTGAGTGAGACTGAGGTGGGACAAGGTGGTACTTGCATGTGGAAGTTGAATACACTCACTCACAGGACTTGCATTGCTTTTTTCTTCCAAGTGAATGATGAACAGAAAATTCAACCTGGCTCTGCATTTTTAATCCAATTTATAACACGATATAGGCAGGGGAACATGGGACTCCGGAAAAGAGTGACTACTGCTGCAAGACGATGGGTTGCAACCCATTCTGCTGATATTGCTGCCGGGTTTGATCAAGAGGCTGCAGCTTCAGTCATGGCAAGACTTGCTATTCTCAGGGCAGAGACATGCTATGCCCGTGATGTTATTAGATGGCTTGATGACACACTTATACGTTTTACAGCCAAGTTTGGGGACTATGTGCCAGAGGATCCTTCTTCCTTCCGCCTATCTTCCAACTTTTCCCTTTATCCCCAGTTTATGTTCCACTTAAGGCGATCTCAATTTATTGATGTCTCTAACACTGCTCCTGATGAAACTGCATATTTCCGGCTAATGCTGAACCGCGAGGGAGTGGTGGGATCTCTTATAATGATTCAACCTACGCTTTTCCAATATTCCTTTGATGGGCCACCTGTTCCAGTACTTCTAGATATTCGTTCCATTTCTCCAGATTGTATCTTGCTCTTTGATTCTTTCTTCCATGTTGTCATTCATTATGGGTCCAAGATAGCTCAGTGGAGGAAGCTTGGTTATGATAAGGACCCTAATCATGAGAACTTTAGAAAGCTGTTGGAAGCCCCAGAACTGGATGTAGAGCAGTTGGTGGTTGAACGGGTTCCAGTGCCAAAGATTATAAGATGTGACCAACATGGTAGTCAGGCTAGGTTTCTTCTTGTCAAGTTGAATCCTTCTGTTACTCAAAATTCAATATACACAGATGGTTCAGATATTATCTTTACCGATGATTTGAGCTTGGAAGTTTTTCTAGATCAATTGCAGGTACTGGCAGTGCAAGGCTGA 2229 0.4598 MDLVELEAVEGLRWTWNSWPAVSKSELIIPLSIMCTPLMQVTGTELPLLPYDPLLCRRCGAVLNPYARLDYQSRIWHCPFCSQRNPFPRSIADTNLPAELFPTYTTVEYSSPSSSSSSLLHPPVFVFVVDVSSSDDELRLLKNELLLLLHHLPDNSLVALITFDSMVYLHDLRYSQCSRLFIFHGDRSLSSNQFLNISRPHQVHIGQTSAIPKQGFLLPISECEFSITAAIEDIHSTANFRSRNRSPRCTGAAILVALGLLECCLINTGSRIMVFTSGPATLGPGMVVDFDLRQSMRTHHDIFNGRATHHAKSCTFYKPLSKRLSDASVVLDLFACSLNQVGAAELREPVENSGGFMILADTFESDQFRKCLRHIFKRDDDGHLKMNFDATIEVVTTKDVKICGALGPCVSLRKKNSLVSETEVGQGGTCMWKLNTLTHRTCIAFFFQVNDEQKIQPGSAFLIQFITRYRQGNMGLRKRVTTAARRWVATHSADIAAGFDQEAAASVMARLAILRAETCYARDVIRWLDDTLIRFTAKFGDYVPEDPSSFRLSSNFSLYPQFMFHLRRSQFIDVSNTAPDETAYFRLMLNREGVVGSLIMIQPTLFQYSFDGPPVPVLLDIRSISPDCILLFDSFFHVVIHYGSKIAQWRKLGYDKDPNHENFRKLLEAPELDVEQLVVERVPVPKIIRCDQHGSQARFLLVKLNPSVTQNSIYTDGSDIIFTDDLSLEVFLDQLQVLAVQG* 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03644 742 Pfam Sec23/Sec24 zinc finger 53 89 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Rops11g03644 742 Gene3D Sec23/Sec24 helical domain 497 739 - -
Rops11g03644 742 FunFam Protein transport protein SEC23 602 706 - -
Rops11g03644 742 Gene3D - 6 485 - -
Rops11g03644 742 Gene3D von Willebrand factor, type A domain 122 386 IPR036465 -
Rops11g03644 742 CDD Sec23_C 592 712 IPR037550 GO:0030127|GO:0090114
Rops11g03644 742 Pfam Sec23/Sec24 beta-sandwich domain 388 488 IPR012990 -
Rops11g03644 742 Pfam Sec23/Sec24 helical domain 500 596 IPR006900 GO:0006886|GO:0006888|GO:0030127
Rops11g03644 742 SUPERFAMILY beta-sandwich domain of Sec23/24 3 499 - -
Rops11g03644 742 SUPERFAMILY vWA-like 122 378 IPR036465 -
Rops11g03644 742 FunFam Protein transport protein SEC23 385 485 - -
Rops11g03644 742 Pfam Sec23/Sec24 trunk domain 121 378 IPR006896 GO:0006886|GO:0006888|GO:0030127
Rops11g03644 742 Pfam Gelsolin repeat 614 700 IPR007123 -
Rops11g03644 742 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 4 741 IPR037364 -
Rops11g03644 742 Gene3D - 50 106 - -
Rops11g03644 742 FunFam Protein transport protein SEC23 122 386 - -
Rops11g03644 742 FunFam Protein transport protein SEC23 50 106 - -
Rops11g03644 742 SUPERFAMILY Helical domain of Sec23/24 500 602 IPR036175 GO:0006886|GO:0006888|GO:0030127
Rops11g03644 742 SUPERFAMILY Zn-finger domain of Sec23/24 46 114 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Rops11g03644 742 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 603 741 IPR036180 -
Rops11g03644 742 Gene3D Severin 602 706 IPR029006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03644 Rops-Chr11 69652816 69655336 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03644 K14006 - gmx:100784000 1137.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03644 11 69652816 69655336 Rops11g03644 11 69652816 69655336 ECH