Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03641 ATGTCTGGAGCTTCATCTGCAGCACCTACTAGTGGTCAAAAGCTCTCTATATTTGCTGCCAAATCTGGATTTGTCATCCCCAAAAACAAATTATCAGGGTCATTGGTTCCCATTTTCCGAGGGACTAAAAAACATGGGGTGGCTGGAGCCATCAATGAAGAAAGTTCAAAACAAATTGAGAGGAGATCAAAATGGGGATCTGATCTGACACAGGATGCGGCTGTCAGGAGGGGAAAGGTTTTGGCTTTGCAGATTCGAGTGGATCAAATTACAAGGCAGTTGGAATCAGAAAAGTTGGAGATTGAAGACACTCAAAACTTGCCATTAGTAGCTGAGAATCCAAATCAAAGCAAGTCTGGCTCTCAGATTAACAGCAAGAAGTCAGAAATGCTTGAACTTGAAAAGCGGGAAGCAATAGGTGAAATACTAAAATTAGATCCCAGTTACAAGCCTCCACCTGGTTTTAAACCATTGCTAAAAGAAGCCAGCATTCCTTTGCCTGTCCAAGAATATCTTGGGAACAAATTTATTGGTCTAATATATGGACCTGAAGGTGATAATCAAAAGCGACTAGAAAAAGAAACTGGTGCCAAGATAAAAATTCATGGAATCAAAGCAGACACAGGAGAGAAAGGTGAAATTAAACCAGGAACTGATATGCAGTGCAGTTACAAGGAGATGCATGTTAACATATCAGCTGATAGCTTTGATAAAGTGGATGCAGCAGTGTCCATCATTGAACTACTGATTACCTCTGTAACTGGGAATTCAGCTGCTGGTTCCACACCTTCTGTATCTGTTTCCGGGGACAGCACTAATGTTCTGAGTCAAAGCCAAGATGGCCCCGCTTCTCATGCAGTTTCTCTATCACGGGAAAACCAGGCTGCGTTGCAACCAGCAGCCGTCACTCAAATGCCCGGAGAACACTTTCAATACTCCAATCCATGGTTTTTGGCAGTTCCATCTCATACCCCTTTATTTGCTTCTTCTGGCAGTATCGTCCCTCCAAATCCACCAGGTTCTGCTAGAACTCCTCAATTTCCATCACAAACAATGAATCCTTCAAACATGGCTTCAACTTTTGGTGCTCAACCTGTACCTGCTGCTGGATTCCACCCAATTGCTCCAAATCAACATGTTTATATGCAAGCACCACCATCAATACAGAATTTACAGCATTCACATATGGCTCAGGCAAGTCCTTTGGGTCACATTGGGCCATTGAGAAATCCTTCTATAATATCTGTACAGAATTTGTCAGCTCCAACAAATGCTTCAATTTCATTTCCAGTTACTTTAAGCCAACCAACACCAATAGGACAACTCCAGACATCAGTGTCTTCGATGCCTCAACCCATGTCTGGTATATCACCATCACCATCACCAATACCTAACCAGCCATTGACCCCTCCCAGTGTATCTTCTGGACAGAGTGGAGGACCTGTCACCATTAAAATGTCTGTAGGTCTCAGAAATATGGGACCGATACCTGTTTCTCTTGGTCCACAGCCAGATGTTGCATTTAAGCCACCACAGTCAAATATGTCAATGATGCCACGATCTGCCCCTTTTCCTCCACGTCAACCAGGAATTTCACCTGGACCGCCATCATCTTTGGGACCAATGCCTACACCTGCACCTACTCATTCATCTGTTAACCGTTTATCAGGAGCTGTTTCATTTCCTTCGCGAGGAATGTCCCCTTCACTTCCATTACCTCAGCAATCAGGAATGCCTAATTCTGCTTTGGGAGTTGCTCTTTATCACGGCCATGGAAAACCACCAGCCTTGATGACTTCAAATGCTGGAAATTTTACTTTCCAATCACAGTGGCCCAATGCAGACTACTGTCAAGTGGTTTCCAGACCAAACAGTCAAGCTACAACTCAGGGTGGTACACAAGAGCCACCTTCTGGTCCACGGCCACCACCATTTGGGTTTGCTGCGCCTGATCGGCCTCTTCAAATCTTTCAAAGGGCCCAAGTCCCCAGCCAGGTGGATCAAACTCAAGCTCATGCATCTTCTGTTCCCTTTGGGGGAAGACCAGGTTCTGTCTCAATTCCACCCAGACACACTGCATTTCCATTTGCTGGTCAACCTGCACCTAGATCTTCAGTCCCACAAATGGGTATGAAGAACTTCATTTTTGCCCCTCAAATGCCAAACTTGCCCAATCCTGGTGTTCAGGGTGGCATGCACATTCGACAAAGCTATCCTGTTCAGAGAACATGGCCAGATATCCCAATGCCTCCGAATCAGAAGTTTGGCAACAATCCCTCTTTGGTTTCTGGTAAGCCAGCATATCCTGCGGACCAAATTTATGACCCCTTTTCACCCACATCTGTTGCACCTCCACAACAGAAAGGTAATCCTGGAAAATGA 2382 0.4496 MSGASSAAPTSGQKLSIFAAKSGFVIPKNKLSGSLVPIFRGTKKHGVAGAINEESSKQIERRSKWGSDLTQDAAVRRGKVLALQIRVDQITRQLESEKLEIEDTQNLPLVAENPNQSKSGSQINSKKSEMLELEKREAIGEILKLDPSYKPPPGFKPLLKEASIPLPVQEYLGNKFIGLIYGPEGDNQKRLEKETGAKIKIHGIKADTGEKGEIKPGTDMQCSYKEMHVNISADSFDKVDAAVSIIELLITSVTGNSAAGSTPSVSVSGDSTNVLSQSQDGPASHAVSLSRENQAALQPAAVTQMPGEHFQYSNPWFLAVPSHTPLFASSGSIVPPNPPGSARTPQFPSQTMNPSNMASTFGAQPVPAAGFHPIAPNQHVYMQAPPSIQNLQHSHMAQASPLGHIGPLRNPSIISVQNLSAPTNASISFPVTLSQPTPIGQLQTSVSSMPQPMSGISPSPSPIPNQPLTPPSVSSGQSGGPVTIKMSVGLRNMGPIPVSLGPQPDVAFKPPQSNMSMMPRSAPFPPRQPGISPGPPSSLGPMPTPAPTHSSVNRLSGAVSFPSRGMSPSLPLPQQSGMPNSALGVALYHGHGKPPALMTSNAGNFTFQSQWPNADYCQVVSRPNSQATTQGGTQEPPSGPRPPPFGFAAPDRPLQIFQRAQVPSQVDQTQAHASSVPFGGRPGSVSIPPRHTAFPFAGQPAPRSSVPQMGMKNFIFAPQMPNLPNPGVQGGMHIRQSYPVQRTWPDIPMPPNQKFGNNPSLVSGKPAYPADQIYDPFSPTSVAPPQQKGNPGK* 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03641 793 Gene3D - 76 152 IPR047086 -
Rops11g03641 793 Gene3D K Homology domain, type 1 155 279 IPR036612 GO:0003723
Rops11g03641 793 ProSiteProfiles Type-1 KH domain profile. 165 246 - -
Rops11g03641 793 MobiDBLite consensus disorder prediction 344 361 - -
Rops11g03641 793 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 163 254 IPR036612 GO:0003723
Rops11g03641 793 Coils Coil 80 107 - -
Rops11g03641 793 MobiDBLite consensus disorder prediction 748 793 - -
Rops11g03641 793 MobiDBLite consensus disorder prediction 455 469 - -
Rops11g03641 793 MobiDBLite consensus disorder prediction 497 576 - -
Rops11g03641 793 MobiDBLite consensus disorder prediction 622 650 - -
Rops11g03641 793 FunFam Splicing factor-like protein 1 isoform A 160 263 - -
Rops11g03641 793 Pfam KH domain 174 246 IPR004088 GO:0003723
Rops11g03641 793 MobiDBLite consensus disorder prediction 257 291 - -
Rops11g03641 793 MobiDBLite consensus disorder prediction 779 793 - -
Rops11g03641 793 MobiDBLite consensus disorder prediction 544 576 - -
Rops11g03641 793 MobiDBLite consensus disorder prediction 522 543 - -
Rops11g03641 793 SMART kh_6 158 251 IPR004087 GO:0003676
Rops11g03641 793 MobiDBLite consensus disorder prediction 438 454 - -
Rops11g03641 793 PANTHER RNA-BINDING PROTEIN RELATED 19 618 IPR045071 -
Rops11g03641 793 MobiDBLite consensus disorder prediction 330 361 - -
Rops11g03641 793 MobiDBLite consensus disorder prediction 438 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03641 Rops-Chr11 69619239 69625633 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03641 K13095 - gmx:100777227 1071.23