Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03640 ATGTTATCACCAATGGTTTTCAAAAGGGTGACAGATCTAGCTTTCTGCTCCATCTTACTGCTACTGTTGGTTGGTTTTGGAAGCTCAGATTTAACCAAAGACAGAGAAGAATGTGGTGATAAACTGGTTGGGTTAGCTAGTTGTCTTCCTTACGTGGGTGGTGAAGCCAAAGTCCCCACCATAGACTGTTGCAGTGGCCTCAAAGAGGTGCTTGACAAGAGCAAGAAATGCATCTGCATCCTCATCAAAGATCGTGATGACCCTAACCTTGGCCTCAAGTTGAATGCCACTCTTGCTGTGCAACTACCAAGTGCTTGCCACGCACCAGCTAATATATCTCAGTGTGTAGATCTTTTGCATTTGGCACCTAACTCTCCTGAAGCCAAGGTATTTGAGGGGTTTGGAAAATCCACCAAAACAAACAGTTCCACACCAGTTTCCAGTGGTGGTGTTGAGAAGGGATCAAGCCAAAGTTCTCAGGAAAAGAGTGGTGCTGGGTGGGGAAAGAGGTGGCTGGTGGCAGAGGTGGTTGGTGCTATTTTACCATTTGTTCTCATATCCCACTTCTTCTTGATCCTAGTTTGA 585 0.4581 MLSPMVFKRVTDLAFCSILLLLLVGFGSSDLTKDREECGDKLVGLASCLPYVGGEAKVPTIDCCSGLKEVLDKSKKCICILIKDRDDPNLGLKLNATLAVQLPSACHAPANISQCVDLLHLAPNSPEAKVFEGFGKSTKTNSSTPVSSGGVEKGSSQSSQEKSGAGWGKRWLVAEVVGAILPFVLISHFFLILV* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03640 194 SMART aai_6 38 115 IPR016140 -
Rops11g03640 194 FunFam Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 35 115 - -
Rops11g03640 194 Pfam Probable lipid transfer 32 115 IPR016140 -
Rops11g03640 194 MobiDBLite consensus disorder prediction 135 163 - -
Rops11g03640 194 Gene3D - 35 115 IPR036312 -
Rops11g03640 194 PRINTS Plant phospholipid transfer protein signature 37 53 IPR000528 GO:0006869|GO:0008289
Rops11g03640 194 PRINTS Plant phospholipid transfer protein signature 93 110 IPR000528 GO:0006869|GO:0008289
Rops11g03640 194 PRINTS Plant phospholipid transfer protein signature 58 72 IPR000528 GO:0006869|GO:0008289
Rops11g03640 194 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 37 116 IPR036312 -
Rops11g03640 194 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 24 156 IPR043325 -
Rops11g03640 194 MobiDBLite consensus disorder prediction 134 163 - -
Rops11g03640 194 CDD AAI_LTSS 45 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03640 Rops-Chr11 69605762 69606838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03640 6 191 Acyl Lipid Metabolism Gene Families AT1G55260 45.503 3.99e-54 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03640 - - pvu:PHAVU_001G268300g 259.61