Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03637 ATGTGCGCAGTGTCATTTTCTGTAACTTATTCAATCCTTCTGGGTTGGCCTTCTTCTTCTTCATTCCCTGCCAAAACCAGCATTAGCATATACACAACCCCCACCACTACCACCACTGCTATTTCTACTATATCCGTAGCAGCTACAGCTAAAGATGTGTGGACCCGAACATCTCCTTCTTCTTCTTCGCAGCGTCGTAGTAGAAGCCAACAGCAACCCACGTACTGGGACCACAGCGTGGACATGGAGGAACTATTAGCTTCAATTGGGCAGACCCAGAACGAGGAAGAGCTTCATGCTGTGATGTCCACTTACACAGGGAGGCAGCTGTCTATTCGGTTCATGGTTTCCATGCTATCACGCGAGCCCGATTGGCAACGTGCCCTTGCCCTTCTTGATTGGATCAATGACAAGGCCAATTACTCTCCCTCTGTCTTCGCTTACAATGTTGTTCTCCGCAACGTGCTTCGAGCCAAGCAGTGGCAGCTTGCGCATGGCCTGTTCGATGAAATGCGTCAAAGGGGTCTTTCCCCTGATAGGTACACTTACTCCACCCTGATTACTTATTTCGGGAAACATGGCTTGTTTGATTCTTCTCTGTTTTGGCTCCAACAGATGGAGCAAGACAAGGTTCCCGGTGACCTCGTCTTGTACAGTAATTTGATTGAGCTTTCGCGTAAGTTGTGTGATTATTCCAAGGCCATTTCCATCTTCACCAGATTGAAAACCTCCACTATTACTCCTGATCTTATAGCTTATAACACCATGATTAATGTGTTTGGAAAGGCTAAGCTTTTCCGCGAGGCTCGTCTTCTTCTTAAAGAGATGAGGGACAATGGTGTTCCCCCGGATACAGTCAGCTACTCGACACTTCTTGCCATCTATGTTGACAATCAAAAGTTTGTGGAAGCACTTTCTGTATTCTCTGAAATGAATGAAGCTAAATGCTCTCTTGATCTCACCACATGCAATATCATGATTGATGTTTATGGCCAGCTTAACATGGCCAAGGAAGCTGACCGCCTCTTCTGGAGCATGAGGAAAATGGGAATTGAACCCAATGTGGTTAGTTATAATACCCTCTTGAGGGTTTATGGAGAGGCTGAGCTATTTGGTGAAGCCATCCATTTGTTTCGTTTGATGCAAAGGAAGGGTGTACAACAGAATGTTGTCACCTACAACACTATGATTAATATTTATGGCAAGTCTCTGGAGCATGAGAAGGCTACAAATCTCATTCAAGATATGCAGAGTAGAGGAATTCAACCAAATGCCATCACTTATTCAACCATAATATCTATTTGGGAAAAGGCAGGGAAACTGGACAGGGCTGCCATATTGTTTCAAAAATTAAGGAGTTCAGGAGTTCAGATTGATCAGGTTCTATACCAGACAATGATCGTGGCCTATGAGAGGGCTGGTTTAGTTGCTCATGCCAAACGCCTACTTCATGAGCTCAAGCGACCCGACAACATTCCCAGGGAGACTGCAATCACAATACTTGCTAGAGCCGGGAGAATCGAAGAGGCTACATGGGTTTTCCGGCAGGCTTTTGATGCTGGGGAGGTAAAAGATATATCTGTATTTGGGTGCATGATTAATCTTTTTTCAAGGAACAAAAAATATTCAAATGTGGTTGAAGTGTTTGAGAAGATGAGAGACGTTGGATATTTTCCTGATTCTAATGTGATTGCTCTTGTGCTGAATGCTTTTGGAAAGCTGCGTGAATTTGAGAAAGCAGATGCTTTATATAGACAGATGCATGAGGAAGGGTGTGTTTTTCCAGATGAAGTTCATTTCCAGATGCTCAGTCTATATGGCTCAAGAAAGGATTTTACGATGGTGGAGTCATTGTTTGAGAAGCTGGATTCCAATCCCAATATCAACAAGAAGGAGTTGCATCTTGTTGTTTCCAGCATTTATGAAAGAGCAGATAGACTTAATGATTCTTCCCGAATCATGAACAGGATGAATCACAGAAGTCATGATCATGCTTAG 1998 0.4374 MCAVSFSVTYSILLGWPSSSSFPAKTSISIYTTPTTTTTAISTISVAATAKDVWTRTSPSSSSQRRSRSQQQPTYWDHSVDMEELLASIGQTQNEEELHAVMSTYTGRQLSIRFMVSMLSREPDWQRALALLDWINDKANYSPSVFAYNVVLRNVLRAKQWQLAHGLFDEMRQRGLSPDRYTYSTLITYFGKHGLFDSSLFWLQQMEQDKVPGDLVLYSNLIELSRKLCDYSKAISIFTRLKTSTITPDLIAYNTMINVFGKAKLFREARLLLKEMRDNGVPPDTVSYSTLLAIYVDNQKFVEALSVFSEMNEAKCSLDLTTCNIMIDVYGQLNMAKEADRLFWSMRKMGIEPNVVSYNTLLRVYGEAELFGEAIHLFRLMQRKGVQQNVVTYNTMINIYGKSLEHEKATNLIQDMQSRGIQPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVQIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMINLFSRNKKYSNVVEVFEKMRDVGYFPDSNVIALVLNAFGKLREFEKADALYRQMHEEGCVFPDEVHFQMLSLYGSRKDFTMVESLFEKLDSNPNINKKELHLVVSSIYERADRLNDSSRIMNRMNHRSHDHA* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03637 665 Pfam PPR repeat 567 592 IPR002885 -
Rops11g03637 665 Pfam PPR repeat 461 488 IPR002885 -
Rops11g03637 665 Pfam PPR repeat 528 556 IPR002885 -
Rops11g03637 665 Gene3D Tetratricopeptide repeat domain 83 226 IPR011990 GO:0005515
Rops11g03637 665 Gene3D Tetratricopeptide repeat domain 227 334 IPR011990 GO:0005515
Rops11g03637 665 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 423 IPR002885 -
Rops11g03637 665 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 144 178 IPR002885 -
Rops11g03637 665 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 424 458 IPR002885 -
Rops11g03637 665 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
Rops11g03637 665 Gene3D Tetratricopeptide repeat domain 344 416 IPR011990 GO:0005515
Rops11g03637 665 Gene3D Tetratricopeptide repeat domain 417 489 IPR011990 GO:0005515
Rops11g03637 665 Pfam PPR repeat family 319 363 IPR002885 -
Rops11g03637 665 Pfam PPR repeat family 389 432 IPR002885 -
Rops11g03637 665 Pfam PPR repeat family 248 292 IPR002885 -
Rops11g03637 665 Pfam PPR repeat family 143 188 IPR002885 -
Rops11g03637 665 FunFam Pentatricopeptide repeat-containing protein At5g39980, chloroplastic 86 225 - -
Rops11g03637 665 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Rops11g03637 665 Gene3D Tetratricopeptide repeat domain 490 664 IPR011990 GO:0005515
Rops11g03637 665 NCBIfam pentatricopeptide repeat 322 355 IPR002885 -
Rops11g03637 665 NCBIfam pentatricopeptide repeat 181 212 IPR002885 -
Rops11g03637 665 NCBIfam pentatricopeptide repeat 391 425 IPR002885 -
Rops11g03637 665 NCBIfam pentatricopeptide repeat 356 389 IPR002885 -
Rops11g03637 665 NCBIfam pentatricopeptide repeat 286 319 IPR002885 -
Rops11g03637 665 NCBIfam pentatricopeptide repeat 252 285 IPR002885 -
Rops11g03637 665 NCBIfam pentatricopeptide repeat 567 596 IPR002885 -
Rops11g03637 665 NCBIfam pentatricopeptide repeat 147 179 IPR002885 -
Rops11g03637 665 NCBIfam pentatricopeptide repeat 528 560 IPR002885 -
Rops11g03637 665 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 560 594 IPR002885 -
Rops11g03637 665 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Rops11g03637 665 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Rops11g03637 665 FunFam pentatricopeptide repeat-containing protein At5g39980, chloroplastic 335 492 - -
Rops11g03637 665 PANTHER OS03G0856100 PROTEIN 473 623 - -
Rops11g03637 665 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Rops11g03637 665 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 525 559 IPR002885 -
Rops11g03637 665 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 459 493 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03637 144 624 Glycosyltransferase AT1G05670 23.819 9.68e-47 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03637 - - gmx:100782934 1100.89