Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03635 ATGGCGGCCACCGCATCCAACGACGGTCCTGTCATGAACCTAATCAACAAGCGCCTCCGTGCACTCCGCAAGAAGCTCAACCGAATAGAGAGTTTTAATTTTGAGATTGGGAATTTGTGTTGGTTGTTGCAGCTTCAACTTGGAGTGGATGAAAGCTATAATTTGTTCGTTTCAACAACCAATGTGCATTCTGTTGGTGGGAAAGTAACGATTGAGGCAAATACTGTTTTTGGTGCATTGCGTGGATTAGAGAATGTTTTACATTGGCACATCATAGACGAGCAGTCATTTCCTCTTGAAGTTCCTACATATCCAAAATTGTGGAAAGGTTCATACACAAAGTGGGAACGTTACACAGTAGAGGATGCATATGAAATTGTCAAGGAAGACTCACCTTATTCCATCTCCTATCAATATGCCTTGGAAGGCATAAATGTGATGGCAGAAGTGGATGTCCCTGGTCATGCAGAATCACGCTTCTGGGAACTATCATTGCCCCGAAAAGAGTCAAGGCTTGGAAATGGCCAAATAATTATAGGAAATGGCCAACTGAGTAACCCTATTGTGGATCTCCTATCAGCAAGATCTAGACATTTGGTATCTGCTAATTCCTCTCATCTGTTAAACCTTCAGAATAGAAATAGTCTGATGATGAGTTCATCATTTTCGTTAACAGCAAAGCCTTCCATCATTAGAAGCAATAGGAAACCATGTTGTAGAAGATTTGATATTATAAGGTCGGAAGTAACCATGGCTCCAAAACAAAGAACAGCGAGCATGTTTCCCCAGTTGTCAAAACGAGGAGTTCCTCTAGCTGATTTACATGTTCAAGAGGTTGTTGACAAGCAGTCTCAGACAGTTAATTTTGCCACTCTAAGTCCTTGTAGCAAGCCGCAGTTTGAGCCTAGTTTTCTCAAGGAAGCCTATGAAATGTGCAGAAATATATGTGCCGAATATGCCAAGACCTTCTATCTAGGAAGTTTGCTTATGACAGAAGAAAGACAGAAAGCTATATGGGCAATTTATGTTTGGTGCAGGAGGACGGATGAACTAGTTGATGGTCCTAACGCTGCCTATATGAGTTCTGCTGCTCTTGATAGGTGGGAAGATAGATTGCATGACATTTTCAATGGACAACCCTATGATATGCTTGATGCTGCTCTTACTGATACAGTCTCCAAGTTTCCCTTGGATATTAAGCCTTTCAGGGACATGATAGAAGGTATGAGAATGGATACAAGGAAAACCCGATACAAAAATTTCCAAGAGTTATATCTTTACTGCTACTATGTTGCGGGAACTGTTGGCTTGATGAGTGTTCCAATCATGGGTATCTCCCCGGAGTCTCTCATCCCTGCTCAAAGTGTATATAAAGCAGCACTATATCTGGGTATTGGAAATCAACTTACAAACATTCTTAGAGATGTGGGGGAGGATGCATTAAGAGGTAGAGTGTACCTTCCCCAAGATGAACTTGCCCAGTTTGGTCTATGTGATGAGGATATTTTCTCAAGAAAGGTCAGTGAAAGATGGAAGGAGTTTATGAAACATCAGATTACAAGGGCAAGATTCTACTTCAACTTAGCAGAAGAAGGAGCTTCTCAGCTTGATAAGGCCAGCCGTTGGCCGGTTTGGTCGTCATTAATATTGTATCGGAAGATCTTGGATGCAATTGAAGACAACGATTATGACAATTTGACAAAACGAGCATATGTTGGACGAACTAAGAAAATTTTGACGTTGCCTATAGCTTATACTAGATCTCTCTCAAATCCCAAAACGATATTTCATGACAAGCCTTATCTAGCAAATTAG 1815 0.4116 MAATASNDGPVMNLINKRLRALRKKLNRIESFNFEIGNLCWLLQLQLGVDESYNLFVSTTNVHSVGGKVTIEANTVFGALRGLENVLHWHIIDEQSFPLEVPTYPKLWKGSYTKWERYTVEDAYEIVKEDSPYSISYQYALEGINVMAEVDVPGHAESRFWELSLPRKESRLGNGQIIIGNGQLSNPIVDLLSARSRHLVSANSSHLLNLQNRNSLMMSSSFSLTAKPSIIRSNRKPCCRRFDIIRSEVTMAPKQRTASMFPQLSKRGVPLADLHVQEVVDKQSQTVNFATLSPCSKPQFEPSFLKEAYEMCRNICAEYAKTFYLGSLLMTEERQKAIWAIYVWCRRTDELVDGPNAAYMSSAALDRWEDRLHDIFNGQPYDMLDAALTDTVSKFPLDIKPFRDMIEGMRMDTRKTRYKNFQELYLYCYYVAGTVGLMSVPIMGISPESLIPAQSVYKAALYLGIGNQLTNILRDVGEDALRGRVYLPQDELAQFGLCDEDIFSRKVSERWKEFMKHQITRARFYFNLAEEGASQLDKASRWPVWSSLILYRKILDAIEDNDYDNLTKRAYVGRTKKILTLPIAYTRSLSNPKTIFHDKPYLAN* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03635 604 ProSitePatterns Squalene and phytoene synthases signature 1. 427 442 IPR019845 GO:0016765
Rops11g03635 604 CDD Trans_IPPS_HH 310 577 IPR033904 GO:0004311
Rops11g03635 604 ProSitePatterns Squalene and phytoene synthases signature 2. 463 488 IPR019845 GO:0016765
Rops11g03635 604 SFLD Phytoene synthase like 306 587 IPR044843 GO:0004311
Rops11g03635 604 Gene3D - 14 87 IPR029018 -
Rops11g03635 604 SUPERFAMILY (Trans)glycosidases 85 162 IPR017853 -
Rops11g03635 604 Pfam Glycosyl hydrolase family 20, catalytic domain 85 158 IPR015883 GO:0004553|GO:0005975
Rops11g03635 604 PANTHER BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE 257 591 - -
Rops11g03635 604 SUPERFAMILY beta-N-acetylhexosaminidase-like domain 43 94 IPR029018 -
Rops11g03635 604 SFLD Squalene/Phytoene Synthase Like 306 587 IPR002060 GO:0009058
Rops11g03635 604 SUPERFAMILY Terpenoid synthases 308 590 IPR008949 -
Rops11g03635 604 Gene3D Glycosidases 88 196 - -
Rops11g03635 604 Pfam beta-acetyl hexosaminidase like 44 84 IPR029019 -
Rops11g03635 604 Gene3D Farnesyl Diphosphate Synthase 301 583 IPR008949 -
Rops11g03635 604 FunFam Phytoene synthase chloroplastic 301 583 - -
Rops11g03635 604 Pfam Squalene/phytoene synthase 319 574 IPR002060 GO:0009058
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03635 Rops-Chr11 69556551 69565972 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03635 44 166 Glycoside Hydrolase AT3G55260 40.761 1.20e-27 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03635 K02291 - gmx:100782394 617.076