Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03547 ATGGCTGCCTCCGTCTCCACTGTCGGAGCTGTCAAAACTCCACTAAGCTTGAATGGCTCTGGAGCTGGAGCTTCAGTTCCCACTTCTGCTTTCTTCGGCAGCAGCTTGAAGAAGGTTACCTCAAGACTCCCCAACACCAAGGTTTCATCTGGAACCTTCAAGATTGTTGCTGCCGAGATTGATGAGGACTCGCAAACCGACAAAGACAGATGGAAGGGTTTGGCCTATGATATTTCAGATGACCAACAAGACATCACAAGGGGAAAGGGTATGGTTGATTCCCTTTTCCAAGCTCCAATGCAAACTGGAACTCACTATGCAGTCATGAGCTCTTATGAGTACCTTAGCACTGGACTTAAACAGTACAACATTGACAACACCATGGGTGGACTTTACATTGCTCCTGCTTTCATGGACAAGCTTGTGGTTCACATCACCAAGAACTTCATGTCCCTTCCCAACATCAAGATTCCTCTCATTCTTGGTATTTGGGGAGGCAAGGGACAAGGAAAATCTTTCCAATGTGAGCTTGTCTTTGCCAAGATGGGAATCAACCCCATCATGATGAGTGCTGGAGAGCTGGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAGAGATACCGTGAAGCTGCTGACATAATCAGGAAGGGAAAGATGTGCTGTCTCTTCATCAATGATCTTGATGCAGGAGCTGGTAGGATGGGTGGAACAACCCAATACACAGTGAACAACCAGATGGTGAATGCCACCCTCATGAACATTGCTGATAACCCCACAAATGTTCAGCTCCCTGGTATGTACAACAAGGAAGAGAACCCACGTGTGCCCATCATTGTCACTGGTAACGATTTCTCTACATTGTATGCTCCTCTCATCCGTGATGGGCGTATGGAGAAGTTCTACTGGGCACCTACAAGGGACGACCGCGTTGGTGTTTGCAAGGGAATTTTCCGCAGTGACAATGTTCCTGATGAAGACATTGTCAAGCTTGTTGACACCTTCCCTGGCCAATCCATTGATTTCTTTGGTGCACTCAGGGCTAGAGTATATGATGATGAAGTGAGGAAGTGGATTTCTGGTGTTGGTATTGATGTTGTTGGGAAGAAGCTTGTGAACTCAAAGGAAGGACCTCCAACCTTTGAGCAGCCCCCGATGACACTGGAGAAGCTCTTGATGTATGTGGAGCTTTCTTCACTGCCACCTAAACTAGAGGCCTTCATTGGAGGCAAAGCAGCCCAAAAAGTAAATATATTCCTGTTTCTGAAGGTTTGTACTAATCCAAATGCCTCAAACTTCAATCCAAGTGCCAGAAGTTGTGATGGCACATCCGTATAA 1344 0.4658 MAASVSTVGAVKTPLSLNGSGAGASVPTSAFFGSSLKKVTSRLPNTKVSSGTFKIVAAEIDEDSQTDKDRWKGLAYDISDDQQDITRGKGMVDSLFQAPMQTGTHYAVMSSYEYLSTGLKQYNIDNTMGGLYIAPAFMDKLVVHITKNFMSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRSDNVPDEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGIDVVGKKLVNSKEGPPTFEQPPMTLEKLLMYVELSSLPPKLEAFIGGKAAQKVNIFLFLKVCTNPNASNFNPSARSCDGTSV* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03547 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 339 IPR027417 -
Rops11g03547 447 Gene3D - 123 305 IPR027417 -
Rops11g03547 447 PANTHER - 15 444 IPR044960 -
Rops11g03547 447 Gene3D - 306 399 - -
Rops11g03547 447 FunFam Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 308 401 - -
Rops11g03547 447 Pfam ATPase family associated with various cellular activities (AAA) 163 304 IPR003959 GO:0005524|GO:0016887
Rops11g03547 447 FunFam Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 123 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03547 Rops-Chr11 67813824 67817301 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03547 - - vvi:100263871 746.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03547 11 67813824 67817301 Rops11g03547 11 67813824 67817301 ECH