Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03538 ATGGTTTCCTCTCCCTTTGTTCTGCTTCTTCTTCCTTCTCTTGCAATTACCCTTTTCATAATTTTCCTTCAAATCCAAACAAGTGCTTCTTCTCTCTCACCTTCACCACAAAACCTCATATTACCTTTAAAAGTCCAAACACTTCCTCATTCAGTTCTAAGGCCTTCTTCTTCTTCTTCTTCACGTAAACTCTCTTTCCAACACAATGTAACCTTAACAGTTTCACTAAAAGTAGGCTCGCCCCCACAGAGTGTTACCATGGTCCTCGACACTGGGAGTGAACTCTCATGGCTACACTGCAAAAAGCTCCCAAATTTAAACTCCATTTTCAACCCACTCCTCTCTTCCTCATACAAACCCACACCCTGCACCTCACCCGTTTGTAGGACCCAAACCCGAGACTTCTCCATACCCGTTTCTTGCGACCCGAAAAAACTCTGCCACGTCACCGTCTCCTACGCCGATGCTACCTCCATAGAAGGCAACCTCGCCATGGAGACGTTCTTCATAGGCGGGTCGGGCCAACCCGGAACCATATTCGGGTGCATGGATTCCGGGTTCAGCTCCAACACAAATGAAGACTCCAAAACAACGGGGTTAATGGGTATGAACCGTGGGTCATTATCTTTCGTGACTCAAATGGGTTTACCCAAATTCTCTTACTGCATCTCCGGCCATGACTCCCCCGGCGTTTTGCTCTTCGGTGACGCCACGTTCAGGTGGCTTGGTCCCTTGAAGTACACGCCGCTCGTTAAAATCTCCACCCCGTTACCGTATTACGACCGGGTCGCATACACGGTCCGACTCGAGGGAATTCGGGTCGGGAAGAAAACCCTTCAGCTACCCAAATCGGTTTTTGCACCGGATCATACCGGGGCGGGTCAAACCATGGTGGATTCGGGTACCCAGTTTACCTTTCTTCTTGGGCCAGTTTACACTGCTTTGAGGGAAGAGTTCGTGGCACAGACTAAAGGGGTGTTGACCCTTTTGGACGACCCGAATTTCGTGTTCCAGGGAGCTATGGATTTATGTTACGGGGTCGGGTCGGTTAAAACGGGTCTTCCTCCGCTTCCCGCCGTGACATTGGTGTTTGAAGGGGCGGAGATGAGTGTGTCGGGGGAGAGGCTATTGTATAAGGTGGGTGACGTGGCAAAAGGGAGTGATTTGGTGTATTGTTTCACGTTTGGGAATTCTGACTTGTTGGGTATTGAAGCTTATGTCATTGGACATTATCATCAACAGAACGTGTGGATGGAGTTTGATTTGGTCAACTCTAGAGTTGGATTTGCTGACACTAAGTGTGAACTAGCTAGTCAAAGACTAGGGATGGGTCCTTAG 1338 0.4888 MVSSPFVLLLLPSLAITLFIIFLQIQTSASSLSPSPQNLILPLKVQTLPHSVLRPSSSSSSRKLSFQHNVTLTVSLKVGSPPQSVTMVLDTGSELSWLHCKKLPNLNSIFNPLLSSSYKPTPCTSPVCRTQTRDFSIPVSCDPKKLCHVTVSYADATSIEGNLAMETFFIGGSGQPGTIFGCMDSGFSSNTNEDSKTTGLMGMNRGSLSFVTQMGLPKFSYCISGHDSPGVLLFGDATFRWLGPLKYTPLVKISTPLPYYDRVAYTVRLEGIRVGKKTLQLPKSVFAPDHTGAGQTMVDSGTQFTFLLGPVYTALREEFVAQTKGVLTLLDDPNFVFQGAMDLCYGVGSVKTGLPPLPAVTLVFEGAEMSVSGERLLYKVGDVAKGSDLVYCFTFGNSDLLGIEAYVIGHYHQQNVWMEFDLVNSRVGFADTKCELASQRLGMGP* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03538 445 ProSiteProfiles Peptidase family A1 domain profile. 72 430 IPR033121 -
Rops11g03538 445 CDD pepsin_A_like_plant 71 434 IPR034161 -
Rops11g03538 445 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 87 98 IPR001969 GO:0004190|GO:0006508
Rops11g03538 445 PRINTS Pepsin (A1) aspartic protease family signature 78 98 IPR001461 GO:0004190|GO:0006508
Rops11g03538 445 PRINTS Pepsin (A1) aspartic protease family signature 406 421 IPR001461 GO:0004190|GO:0006508
Rops11g03538 445 PRINTS Pepsin (A1) aspartic protease family signature 296 307 IPR001461 GO:0004190|GO:0006508
Rops11g03538 445 PANTHER ASPARTYL PROTEASE-RELATED 17 434 IPR001461 GO:0004190|GO:0006508
Rops11g03538 445 FunFam Aspartic proteinase PCS1 63 236 - -
Rops11g03538 445 Pfam Xylanase inhibitor C-terminal 264 430 IPR032799 -
Rops11g03538 445 Gene3D Acid Proteases 242 439 IPR021109 -
Rops11g03538 445 FunFam Aspartic proteinase PCS1 240 438 - -
Rops11g03538 445 SUPERFAMILY Acid proteases 72 434 IPR021109 -
Rops11g03538 445 Gene3D Acid Proteases 61 235 IPR021109 -
Rops11g03538 445 Pfam Xylanase inhibitor N-terminal 73 236 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03538 Rops-Chr11 67642651 67644358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03538 39 315 Miscellaneous Gene Families AT1G44130 26.621 2.31e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03538 - - gmx:100783835 684.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03538 11 67642651 67644358 Rops11g03538 11 67642651 67644358 ECH