Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03531 ATGGAATCACCTCATGCTAGAAAATCTGGACTGAACCTCCCAGCTGGGATGTCAGGAACCTCACTACGCCTTGACACCTTCTCAGCATCATCACCTTCTTCTTCTCTTCGCAGCATCTCAAGCCTTTCACCTTCTAAACCTTCAACTTGTAGTGACAGGTTCATACCTTGTAGATCATCTTCAAGGCTCCACACTTTCGGCCTCATTGATAAGCCATCACCTGTCAAAGAAGGGAGTAACGAAACCTATTCAAGGTTATTGAAATCTGAGCTTTTTGGATCTGACTTCGTTTCTTCTCCTTCTTCTTCTTCCCCTGCAGGTGGTCCTGCTTCTCCTATGAGTCCCAGCAAGAACATGCTGCGTTTCAAGACTGATCATTCTGGACCTTCTTCCCCTTATTCACCTTCAATTTTAGGCCACCAAACTGGGTTCTCTTCTGAATCTTCAACCCCTCCAAAGCCTCCTAGGAAAGTTCCCAAGACACCCCACAAGGTTCTGGATGCCCCTTCACTTCAAGATGACTTTTACTTGAATCTCGTGGACTGGTCCTCACAAAATGTTCTTGCCGTGGGGCTAGGCACTTGTGTTTATCTCTGGAGTGCTTCAAACAGCAAAGTAACTAAGCTATGTGACTTGGGGCCTTATGATGGTGTCTGTTCTGTCCAGTGGACTAAGGAGGGTTCTTTTATATCCATTGGTACAAATCTTGGTCAAGTTCAGATTTGGGATGGTACTCGCTGTAAGAAGGTGAGAACAATGGGTGGGCATCAAACAAGAACTGGTGTCTTAGCATGGAATTCTCGAATTTTGGCTTCAGGAAGCAGGGATAGGAACATACTTCAGCATGACATGAGGGTTTCAAGTGACTTTGTTAGCAAGCTTGTTGGCCACAAGTCTGAGGTATGTGGGTTGAAATGGTCCTGTGATGATAGAGAACTTGCTTCTGGTGGTAATGATAATCAGCTCTTGGTATGGAATCAGCACTCTCAACAACCAGCTTTGAGACTCACTGAGCACACTGCTGCTGTGAAGGCCATTGCTTGGTCACCTCACCAGAGTGGTCTCCTTGTGTCTGGTGGTGGAACAGCTGATAGGTGTATTCGTTTTTGGAACACTACAAATGGCCATCAAGTGAACTGTGTTGACACTGGGAGCCAGGTCTGCAACCTTGCTTGGAGTAAAAATGTGAATGAGCTAGTAAGTACTCATGGGTACTCCCAAAATCAGATTATGGTTTGGAAATATCCATCACTTGCAAAGGTTGCAACTCTAACTGGCCATAGCATGAGAGTTCTATACCTTGCAATGTCTCCTGATGGTCAGACAATAGTAACTGGTGCAGGGGATGAGACTTTGAGGTTTTGGAATGTTTTTCCATCAATGAAAACACCTGCCCTGGTTAAAGATACAGGCCTTTGGTCATTGGGGCGCACTCAAATTCGATGA 1446 0.4544 MESPHARKSGLNLPAGMSGTSLRLDTFSASSPSSSLRSISSLSPSKPSTCSDRFIPCRSSSRLHTFGLIDKPSPVKEGSNETYSRLLKSELFGSDFVSSPSSSSPAGGPASPMSPSKNMLRFKTDHSGPSSPYSPSILGHQTGFSSESSTPPKPPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWSASNSKVTKLCDLGPYDGVCSVQWTKEGSFISIGTNLGQVQIWDGTRCKKVRTMGGHQTRTGVLAWNSRILASGSRDRNILQHDMRVSSDFVSKLVGHKSEVCGLKWSCDDRELASGGNDNQLLVWNQHSQQPALRLTEHTAAVKAIAWSPHQSGLLVSGGGTADRCIRFWNTTNGHQVNCVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSLAKVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLRFWNVFPSMKTPALVKDTGLWSLGRTQIR* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03531 481 ProSitePatterns Trp-Asp (WD) repeats signature. 358 372 IPR019775 -
Rops11g03531 481 ProSiteProfiles Trp-Asp (WD) repeats profile. 294 335 IPR001680 GO:0005515
Rops11g03531 481 MobiDBLite consensus disorder prediction 1 54 - -
Rops11g03531 481 ProSitePatterns Trp-Asp (WD) repeats signature. 443 457 IPR019775 -
Rops11g03531 481 MobiDBLite consensus disorder prediction 98 151 - -
Rops11g03531 481 FunFam FIZZY-related 2 isoform 1 159 459 - -
Rops11g03531 481 ProSiteProfiles Trp-Asp (WD) repeats profile. 424 457 IPR001680 GO:0005515
Rops11g03531 481 Gene3D - 117 458 IPR015943 GO:0005515
Rops11g03531 481 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 37 463 IPR033010 GO:0010997|GO:0097027|GO:1904668
Rops11g03531 481 Pfam Eukaryotic translation initiation factor eIF2A 319 455 IPR013979 -
Rops11g03531 481 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 294 326 - -
Rops11g03531 481 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 424 457 - -
Rops11g03531 481 MobiDBLite consensus disorder prediction 14 54 - -
Rops11g03531 481 SMART WD40_4 203 243 IPR001680 GO:0005515
Rops11g03531 481 SMART WD40_4 417 456 IPR001680 GO:0005515
Rops11g03531 481 SMART WD40_4 246 283 IPR001680 GO:0005515
Rops11g03531 481 SMART WD40_4 374 414 IPR001680 GO:0005515
Rops11g03531 481 SMART WD40_4 329 371 IPR001680 GO:0005515
Rops11g03531 481 SMART WD40_4 287 326 IPR001680 GO:0005515
Rops11g03531 481 SMART WD40_4 159 200 IPR001680 GO:0005515
Rops11g03531 481 SUPERFAMILY WD40 repeat-like 157 457 IPR036322 GO:0005515
Rops11g03531 481 MobiDBLite consensus disorder prediction 98 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03531 Rops-Chr11 67508913 67511950 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03531 291 457 Miscellaneous Gene Families AT5G08390 23.295 2.63e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03531 K03364 - gmx:547741 846.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03531 11 67508913 67511950 Rops11g03531 11 67508913 67511950 ECH