Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03520 ATGGGAGATCCATCGGAGAGGTTCGGATCGGAAGGTTCCGATTTCGGCGCCGCCATTAAGTCCGATGACTTGTGCATGGAAATCGATCCGCCTTTTCAGGAAAACGCTGCAACCGCCGATGACTGGCGGAAAGCTCTCAACAAAGTCGTCCCCGCCGTCGTTGTCCTCCGAACCACCGCTACTCGCGCCTTCGACACTGAATTAGCCGCCGCCGGTTACGCCACTGGCTTCGTCGTCGATAAACGCCGCGGTATTATTCTCACCAATCGCCATGTCGTCAAGCCAGGTCCTGTAGTTGCAGAAGCGATGTTCTTGAACCGTGAAGAGGTTCCTGTGCGTCCGATATACAGAGATCCAGTACATGATTTTGGGTTCTTTTGTTACGATCCTAGTGCTATACAATTTTTGAACTATGAGGAGATACCTCTTGCTCCCGAGGCTGCTTGTGTTGGACTGGAAATCAGAGTCGTTGGTAATGATAGTGGTGAGAAGGTTTCCATTTTGGCTGGTACTCTTGCTCGATTGGATAGGGATGCTCCTCAATACAAGAAGGATGGGTATAATGACTTCAATACATTCTATATGCAAGCTGCATCAGGGACCAAAGGAGGATCAAGTGGTTCCCCGGTTATTGATTGGGAAGGCAGGGCAGTGGCTCTGAATGCTGGGAGCAAGTCATCAAGTGCATCAGCATTCTTTTTACCTTTAGAACGAGTTGTGAGGGCATTAAGGTTTATTCAAAAGGGCAATGAAACATATGTTGATAAATGGAAGGCGATTCCTATACCTCGTGGTACACTTCAGGTGACCTTTCTCCATAAAGGGTTTGATGAGACTCGTCGACTTGGTCTCAGAAGTGAGACAGAGCAGATAGTACGACATGCTTCTCCTGTGAGTGAAACTGGAATGCTTGTTGTGGACTCGGTGGTGCCAGGCGGTCCAGGATATAAACATTTGGAACCAGGTGATGTACTTGTTCGTGTCAATGGAGAAGTTATTACTCAATTCCTGAAACTGGAGACTATACTTGATGACAGTGTAAACAAAAATATTGAATTACAAATTGAAAGGGGTGGAACATCAAAGAGTTTATCTTTGTTGGTGCAAGATTTGCACTCAATAACTCCAGATCATTTCTTAGAAGTTAGTGGGGCGGTAATACATCCTCTTTCTTATCAGCAGGCCAGAAATTTCCGTTTCCCTTGTGGTCTTGTTTATGTGACTGAACCAGGATATATGCTCTTTAGAGCAGGAGTTCCTCGCCATGCAATAATCAAGAAATTTGCTGGTGAAGAAATATCTTGTCTCGAGGAACTAATATCAGTTCTCTCAAAGCTATCTAGGGGTGCTCGAGTACCATTGGAGTATATAAGCTACATGGACCGTCATAGAAGGAAGTCTGTTTTGGTGACGGTTGATCGCCATGAATGGTATGCACCTCCCCATATATACACTCGTGATGACAGTACTGGCCTTTGGATTGCTAAGCCTGCTTTTCAGCCTGATTCCCTTTTTCTATCATCTGATGCTAAAGATGTTGGAAATCTGGCCAGACAGCCAGCTTCAATAACTGGTGAGCACGCTTGTGAGAGAAATGTGTGCGAAGGTAACAATCGGGAGTTGGTAGATGGTGTCACTAGCATGGAAACCAATTATGAAGATTCTTCAGAGTATGCACCTCACCACGATGGATCTGATGGCATGGTTAAAAAACGGAAAGTAGATGAAGATTTATCAAATGATGGAAGTGTTGTTGCTGATTTTTCCTTAAATGATACCCGGGAAACTAAGCTAGTAAAATCAAGTGTTATACAGGATGATGGGTTAATGGACTATCAAGGTGCAACTGCTGCAACAGCAAATGCATCAGTTGCTGAACGTGTGATCGGGCCTACTCTTGTGATGTTTGAGGTTCATGTTCCTCCATCTTGTATGCTTGACGGTGTTCATTCACAGCACTTTTTTGGAACTGGTGTCATAATATATCACTCTCAAGATATGGGATTAGTTGCAGTTGACAAGAATACAGTTGCGATATCTGCATCTGATGTAATGTTATCTTTCGCTGCTTTATCAGTTGAAATTCCAGGCGAGGTGGTATTTCTCCATCCCGTTCACAATTATGCTCTCATATCATATGATCCCTCTGCTTTGGGAGCTGTTGGTGCTTCAGTAGTTCGTGCTGCAGAGTTACTTCCAGAGCCGGTGTTACGTAGAGGGGATTCTGTTTACCTTGTGGGGTTAAGTAGAAGCCTTCAAGCGATTTCTAGGAAATCAGTTGTGACCAATCCTTGTGCGGCATTAAATATAGGATCTGCTGATTCCCCACGTTACAGAGCAACCAACATGGAAGTGATTGAGCTGGATACCGATTTCGGTAGTACATTTTCGGGTGTGCTAACAGACGAACAAGGAAGGGTCCAAGCTATATGGGGAAGCTTCTCTACTCAGCTGAAATTTGGTTCCAGTACATTAGAAGATCATCAATTTGTGAGGGGTATTCCGATTTATGCAATAAGTCAGGTCCTTGACAAGATTGTATCCGGTGCAAATGGGCCACCTCGACTTATAAATGGTGTCAAAAGGCCTATGCCACTTGTGAGAATTTTAGAGGTTGAACTTTATCCAACATTACTTTCAAAGGCTAGGAGTTTTGGACTAAGTGATGATTGGTTTCAGGCACTTGTTAAGAAAGACCCAATGAGGCGACAGGTTTTACGTGTTAAAGGTTGTTTGGCTGGATCAAAGGCTGAGAATCTTTTAGAGCAAGGGGACATGGTTTTAGCAATCAATAAAGAACCAGTCACATGCTTCCTTGACATTGAAAATGCTTGCCAAGCTTTAGACAATACCAATGATGGGAAGCTTCAGATGACTATTTTCCGACAGGGACAAGAGATTGAACTTCTTGTGGGAACAGATGTTAGGGACGGAAATGGCACAACTCGTGCAGTTAATTGGAGTGGTTGTATTGTTCAAGATCCCCATCTAGCAGTGCGTGCTCTTGGATTTCTTCCTGAAGAAGGTCATGGTGTATATGTGGCAAGGTGGTGTCATGGGAGTCCTGTACATAGATATGGTCTATATGCTCTTCAGTGGATAGTTGAAGTTAATGGAAAACCAACTCCAAATCTAGATGCTTTTGTTAATGTGACAAAGGAGCTAGAGCATGGAGAGTTTGTTCGTGTAAAGACAATCCACCTTAATGGGAAGCCACGAGTTCTAACATTGAAACAAGATTTGCACTACTGGCCTACATGGGAATTAAGATTTGATCCAGACACTGCAATTTGGCATCGTAATGTAATCAAGGCATTGAACTGCAATTCTATATGA 3336 0.4379 MGDPSERFGSEGSDFGAAIKSDDLCMEIDPPFQENAATADDWRKALNKVVPAVVVLRTTATRAFDTELAAAGYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFLNREEVPVRPIYRDPVHDFGFFCYDPSAIQFLNYEEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPQYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWEGRAVALNAGSKSSSASAFFLPLERVVRALRFIQKGNETYVDKWKAIPIPRGTLQVTFLHKGFDETRRLGLRSETEQIVRHASPVSETGMLVVDSVVPGGPGYKHLEPGDVLVRVNGEVITQFLKLETILDDSVNKNIELQIERGGTSKSLSLLVQDLHSITPDHFLEVSGAVIHPLSYQQARNFRFPCGLVYVTEPGYMLFRAGVPRHAIIKKFAGEEISCLEELISVLSKLSRGARVPLEYISYMDRHRRKSVLVTVDRHEWYAPPHIYTRDDSTGLWIAKPAFQPDSLFLSSDAKDVGNLARQPASITGEHACERNVCEGNNRELVDGVTSMETNYEDSSEYAPHHDGSDGMVKKRKVDEDLSNDGSVVADFSLNDTRETKLVKSSVIQDDGLMDYQGATAATANASVAERVIGPTLVMFEVHVPPSCMLDGVHSQHFFGTGVIIYHSQDMGLVAVDKNTVAISASDVMLSFAALSVEIPGEVVFLHPVHNYALISYDPSALGAVGASVVRAAELLPEPVLRRGDSVYLVGLSRSLQAISRKSVVTNPCAALNIGSADSPRYRATNMEVIELDTDFGSTFSGVLTDEQGRVQAIWGSFSTQLKFGSSTLEDHQFVRGIPIYAISQVLDKIVSGANGPPRLINGVKRPMPLVRILEVELYPTLLSKARSFGLSDDWFQALVKKDPMRRQVLRVKGCLAGSKAENLLEQGDMVLAINKEPVTCFLDIENACQALDNTNDGKLQMTIFRQGQEIELLVGTDVRDGNGTTRAVNWSGCIVQDPHLAVRALGFLPEEGHGVYVARWCHGSPVHRYGLYALQWIVEVNGKPTPNLDAFVNVTKELEHGEFVRVKTIHLNGKPRVLTLKQDLHYWPTWELRFDPDTAIWHRNVIKALNCNSI* 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03520 1111 PRINTS HtrA/DegQ protease family signature 191 208 IPR001940 GO:0004252|GO:0006508
Rops11g03520 1111 PRINTS HtrA/DegQ protease family signature 150 174 IPR001940 GO:0004252|GO:0006508
Rops11g03520 1111 PRINTS HtrA/DegQ protease family signature 318 330 IPR001940 GO:0004252|GO:0006508
Rops11g03520 1111 PRINTS HtrA/DegQ protease family signature 84 96 IPR001940 GO:0004252|GO:0006508
Rops11g03520 1111 PRINTS HtrA/DegQ protease family signature 213 230 IPR001940 GO:0004252|GO:0006508
Rops11g03520 1111 SUPERFAMILY PDZ domain-like 907 1006 IPR036034 GO:0005515
Rops11g03520 1111 SUPERFAMILY Trypsin-like serine proteases 41 244 IPR009003 -
Rops11g03520 1111 SMART pdz_new 280 359 IPR001478 GO:0005515
Rops11g03520 1111 SMART pdz_new 1000 1069 IPR001478 GO:0005515
Rops11g03520 1111 SMART pdz_new 890 964 IPR001478 GO:0005515
Rops11g03520 1111 SUPERFAMILY PDZ domain-like 1009 1091 IPR036034 GO:0005515
Rops11g03520 1111 Pfam Trypsin-like peptidase domain 74 220 - -
Rops11g03520 1111 CDD PDZ_serine_protease 280 366 - -
Rops11g03520 1111 SUPERFAMILY PDZ domain-like 304 402 IPR036034 GO:0005515
Rops11g03520 1111 Gene3D - 28 135 IPR043504 -
Rops11g03520 1111 ProSiteProfiles PDZ domain profile. 269 333 IPR001478 GO:0005515
Rops11g03520 1111 Pfam Peptidase family M50 258 370 IPR008915 GO:0006508
Rops11g03520 1111 Gene3D - 985 1082 IPR036034 GO:0005515
Rops11g03520 1111 Gene3D - 146 256 IPR043504 -
Rops11g03520 1111 PANTHER PRO-APOPTOTIC SERINE PROTEASE NMA111 18 1107 - -
Rops11g03520 1111 Pfam PDZ domain 305 357 IPR041489 -
Rops11g03520 1111 Gene3D - 905 977 IPR036034 GO:0005515
Rops11g03520 1111 SUPERFAMILY Trypsin-like serine proteases 636 845 IPR009003 -
Rops11g03520 1111 Gene3D - 280 372 IPR036034 GO:0005515
Rops11g03520 1111 Pfam PDZ-like domain 981 1057 IPR025926 -
Rops11g03520 1111 Pfam PDZ-like domain 373 446 IPR025926 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03520 Rops-Chr11 67296715 67318820 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03520 K22686 - gmx:100809144 2018.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03520 11 67296715 67318820 Rops11g03520 11 67296715 67318820 ECH