Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03513 ATGAGCGTAAGAAGCAGAAAGAGAAGTTTCAATTCCATTTCCCCTTCACCTTCTTCAACCTCAATCCCTAACAAAAACACCAACATTTCACTCTTCACAATGCCACAAACCACAAAATCCCTATTTGAAATAGTCTCCACCACTCCTTCTTCATTCATCGAGAAGGTTCTAGAAGATTCGGTTATTCGGGTCACCCAACAAGACGTTGAAGACATTCTCAAACTCTCATACGGGTTTCCGGGTCAAGCCGTGAAATTTTTCCGATGGGCCGGTCACAAACTCAACCACAACCACACCCCATATGCTTGGAACCTCGTCATTGATATCTTAGGGAAGAATCGCTTCTTCGAACCCATGTGGGATGCAATCAAATCAATGAAAAGAGAAAATTTACTTTCCCTAGCGACTTTTGCCTCTGTTTTCGGTAGCTATGTCGTCGCTGGTCGTGTAAACGACGCTGTTTTGGCTTTCGAGGTGATGGACGGTTATGGTTGCAAAAAAGACGTTGTTGCCTTGAATTCACTTTTGAGTGCGATTTGTAGTAATGGTAGGACTGTTGATGCTTGTGATTATTTGCAAATAGCTAAGAAAATTGTTAGGCCTGATTCTGATACTTATGCAATTTTGATGGAGGGTTGGGAGAATGAAGGGAATGTGGTTGGTGTTAAAGAAACTTTTGCTGAGATGGTTATCGAGATTGGTTGGGACCCTAAAAATGTGCCTGCTTATGATTCATTTTTGTGTACTTTGATTAAGGGGCGTGATGGGGTTCTTGAAGCCCTTAAATTCTTTGATTCAATGAGAGATAGGAGGTGTTATCCGGGGTTAAGGTTTTATAAGGTTGCACTTGATGAGTGTGTTAAGGATCATGATTTAAGGACAGCAGAGTTCTTTTGGGATGTGATGGTGGGAAGAACAACCTTGCAGCCCACCACACCGATGTATAATTCGATGATTGCGTTGTATTGTTATCGAAATGATACCGATGCAGCAAGAAGGATGATGGATGGCATGGTTTACAAAGGGGCTTTTCCGGATTCGTTAACTTATAACTTGTTGTTTAGGTTCTTGATCAAGGGAAGGAAGGTACGGGATGCTTCGGTGATATTCAATGAGATGGTGAAGAATGAGTGTGTGCCGGATCAGGCTAATTGTGATGCAGCTATTAAAATTTACTTAGATGAAGGAGATGCTTTCATGGCGATGAAAGTTTGGAAATGCATGGTGGAGAATTACCGTGATGATTTGGATGATTCAGCGAATTCACTGGTTGTGGGGCTTCGGGATCTTGATAGGGTTCCAGAAGCAGTTAAGTATGCTGAGGATATGATTGACAGGGGAATCAGGTTAACCTCTTCCACATTGTCTAAGTTGAAACAGTACCTTGTCAAAGAAAGAAAAGAATTTGTGTATGAAGAACTCTTGAGAAAGTGGAAATCTCATTAG 1446 0.4163 MSVRSRKRSFNSISPSPSSTSIPNKNTNISLFTMPQTTKSLFEIVSTTPSSFIEKVLEDSVIRVTQQDVEDILKLSYGFPGQAVKFFRWAGHKLNHNHTPYAWNLVIDILGKNRFFEPMWDAIKSMKRENLLSLATFASVFGSYVVAGRVNDAVLAFEVMDGYGCKKDVVALNSLLSAICSNGRTVDACDYLQIAKKIVRPDSDTYAILMEGWENEGNVVGVKETFAEMVIEIGWDPKNVPAYDSFLCTLIKGRDGVLEALKFFDSMRDRRCYPGLRFYKVALDECVKDHDLRTAEFFWDVMVGRTTLQPTTPMYNSMIALYCYRNDTDAARRMMDGMVYKGAFPDSLTYNLLFRFLIKGRKVRDASVIFNEMVKNECVPDQANCDAAIKIYLDEGDAFMAMKVWKCMVENYRDDLDDSANSLVVGLRDLDRVPEAVKYAEDMIDRGIRLTSSTLSKLKQYLVKERKEFVYEELLRKWKSH* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03513 481 Gene3D Tetratricopeptide repeat domain 239 481 IPR011990 GO:0005515
Rops11g03513 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Rops11g03513 481 MobiDBLite consensus disorder prediction 1 27 - -
Rops11g03513 481 Pfam PPR repeat family 311 356 IPR002885 -
Rops11g03513 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 346 380 IPR002885 -
Rops11g03513 481 Pfam PPR repeat 102 130 IPR002885 -
Rops11g03513 481 Gene3D Tetratricopeptide repeat domain 36 232 IPR011990 GO:0005515
Rops11g03513 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 274 IPR002885 -
Rops11g03513 481 NCBIfam pentatricopeptide repeat 314 346 IPR002885 -
Rops11g03513 481 NCBIfam pentatricopeptide repeat 349 381 IPR002885 -
Rops11g03513 481 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 273 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03513 Rops-Chr11 67157355 67160813 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03513 239 479 Glycosyltransferase AT1G05670 25.714 8.61e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03513 - - tpra:123894758 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03513 11 67157355 67160813 Rops11g03513 11 67157355 67160813 ECH