Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03510 ATGGATGAAGAAGCACGAAAGATTTTCAACAAGTTCGACAAGAACGGCGACGGAAAGATCTCGTGCAACGAACTGAAGGAGTTGATGGCGGCGCTCGGATCCAAAACGACGTCGGAGGAGGTTCGTCGAATGATGGCGGAGCTTGATCGGAACGGCGACGGTTACATTGATCTGAAGGAGTTCGGAGACTTCCATTGCGGCAGCGCCGGCGATGAGAGGGAGCTCCGGGAGGCGTTCGAGTTGTACGATCTGGACAAGAACGGGTTGATATCTGCGAAGGAGTTGCACGCGGTGATGAGGAGGTTAGGGGAGAAATGCTCACTCAGTGATTGCCGGAGAATGATCGGAAATGTTGACGCCGACGCGGACGGCAATGTGAATTTCGAAGAGTTCAAGAAGATGATGAGTGGCTCTTAG 417 0.53 MDEEARKIFNKFDKNGDGKISCNELKELMAALGSKTTSEEVRRMMAELDRNGDGYIDLKEFGDFHCGSAGDERELREAFELYDLDKNGLISAKELHAVMRRLGEKCSLSDCRRMIGNVDADADGNVNFEEFKKMMSGS* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03510 138 ProSitePatterns EF-hand calcium-binding domain. 119 131 IPR018247 -
Rops11g03510 138 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 74 135 - -
Rops11g03510 138 CDD EFh 4 61 IPR002048 GO:0005509
Rops11g03510 138 ProSiteProfiles EF-hand calcium-binding domain profile. 106 138 IPR002048 GO:0005509
Rops11g03510 138 FunFam Calmodulin A 1 67 - -
Rops11g03510 138 ProSiteProfiles EF-hand calcium-binding domain profile. 70 105 IPR002048 GO:0005509
Rops11g03510 138 Gene3D - 72 137 - -
Rops11g03510 138 ProSiteProfiles EF-hand calcium-binding domain profile. 36 64 IPR002048 GO:0005509
Rops11g03510 138 Pfam EF-hand domain pair 73 136 IPR002048 GO:0005509
Rops11g03510 138 Pfam EF-hand domain pair 3 61 IPR002048 GO:0005509
Rops11g03510 138 ProSitePatterns EF-hand calcium-binding domain. 13 25 IPR018247 -
Rops11g03510 138 CDD EFh 74 136 IPR002048 GO:0005509
Rops11g03510 138 SMART efh_1 4 32 IPR002048 GO:0005509
Rops11g03510 138 SMART efh_1 110 138 IPR002048 GO:0005509
Rops11g03510 138 SMART efh_1 40 68 IPR002048 GO:0005509
Rops11g03510 138 SMART efh_1 74 102 IPR002048 GO:0005509
Rops11g03510 138 Gene3D - 1 71 - -
Rops11g03510 138 ProSiteProfiles EF-hand calcium-binding domain profile. 1 35 IPR002048 GO:0005509
Rops11g03510 138 FunFam Probable calcium-binding protein CML27 68 138 - -
Rops11g03510 138 ProSitePatterns EF-hand calcium-binding domain. 83 95 IPR018247 -
Rops11g03510 138 SUPERFAMILY EF-hand 3 136 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03510 Rops-Chr11 67123335 67137298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03510 3 136 EF-hand Containing Proteins AT1G18210 57.463 1.84e-51 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03510 K13448 - gmx:100791597 254.988