Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02704 ATGAGTTCAGTTCCAAAAGAAACAATCGAAGTCATCGCTCAGAGCATTGGCATCACCAATTTGTCCTCCGATGTTGCCCTCGCTCTCGCTCCCGATCTTGAATATCGAATTCGAGAAATCATGCAGGAATCAATAAAATGCATGCGTCATTCAAAGAGAACCTTTCTTACCGCAGATGATGTGGATAGTGCACTTGGATTGAGAAATTTAGAGCCGATATATGGTTTCACCTCTAATGATCCTCTGCGGTTCAAAAGAGCTGCTGGACACAAGGATTTGTTCTACATTGATGACAAAGATGTGGAAATTAAAGATCTGATTGAAGCACCTTTACCAAAAGCACCCCTTGATACATCAATTACCAGTCACTGGTTGGCTATTGAAGGCGTGCAACCTGCAATTCCTGAAAATGCTCCAGTTGAAGCTCCCTCCGAGATAAGAAAATCTGAATATAAGGAAGATGGGCTTCCTGTTGATGTTAAATTACCTGTAAAACATGTAATAACAAGGGAGCTTCAGCTTTACTATGAAAAAATAACTGAGCTGAGTTTAAATAAGCCTGGATCTGTTCCCTTTAGAAAAGCTTTGATTAGCTTGGCAACTGACTCAGGACTCCATCCCTTGGTTCCTTATTTAACATGCTTTGTTGCTGATGAGGTGGCACGAAATTTAAATAATTTGAATATTTTATTTGCCTTGATGCGACTTGTGCAGAGCCTTTTGCGAAATTCTCACATACACATAGAACTTTATTTACATCAATTGATGCCGCCTATCATTACTTGTGTTGTTGCAAAAAGGCTAGGAAACAGACAATCTGATAATCATTGGGAGCTTAGGAGCTTCAGTGCTAATCTTGTTGCTTCGATATGCAAAAGATTTGGGCATATTTATCACAATATTCAGCCGCGTGTGACCAAGACATTTCTTCATTCTTTCTTGGACCCTACAAAAGCTCTACCTCAACACTATGGTGCAATAAAAGGGATAGCAGCTCTTGGATCAAGACTGGTTCGCTTGCTTATACTTCCAAATCTCGAGCCATATTTGCATCTTCTTGAACCAGAAATGCAACTTGAGAAACAAAAAAATGAAATAAAAAGGCACGAAGCATGGCAAGTTTACGGGGCCTTGCTGTGTGCAGTGGGCCAATGTATGCATGAGAAGGTCAAAACAGTAAGCAGTTTGCTCTCTCCTCCAACTCGTGCTACTTCAAGAGGCAATGGAAAATCCAGGATTGCTTTGCCAGGTAAACGTAAAGCCAGCATGGACAATGTTATGCAACAGCAGCAACCTCCACTGAAGAAAATTGCAACAGATGGTCCTGGTGGTGTGGTACCAATGAACTCCATGTCAGTTGACATGCAAGGATCAAGTGGTGGATTTTCCACCATGATGGGAGTTTCTAATGTTGCCATGTCATCGATGGGTCGCCAATTATCCAACGACAACTTGCCAGGGAGAGAGGTTGGAGGTCAACAATGGAAGTCATCTACTTCCATTCTTGCTCAAGCTTGGAAGGATGACATTGATGCAGGACAATTACTGTCATCGGTCTATGAATTATTTGGTGAAAGTGTGTTATCGTTTGTTCCAAAACCAGAAGCATGTATATTCTTGTAG 1623 0.414 MSSVPKETIEVIAQSIGITNLSSDVALALAPDLEYRIREIMQESIKCMRHSKRTFLTADDVDSALGLRNLEPIYGFTSNDPLRFKRAAGHKDLFYIDDKDVEIKDLIEAPLPKAPLDTSITSHWLAIEGVQPAIPENAPVEAPSEIRKSEYKEDGLPVDVKLPVKHVITRELQLYYEKITELSLNKPGSVPFRKALISLATDSGLHPLVPYLTCFVADEVARNLNNLNILFALMRLVQSLLRNSHIHIELYLHQLMPPIITCVVAKRLGNRQSDNHWELRSFSANLVASICKRFGHIYHNIQPRVTKTFLHSFLDPTKALPQHYGAIKGIAALGSRLVRLLILPNLEPYLHLLEPEMQLEKQKNEIKRHEAWQVYGALLCAVGQCMHEKVKTVSSLLSPPTRATSRGNGKSRIALPGKRKASMDNVMQQQQPPLKKIATDGPGGVVPMNSMSVDMQGSSGGFSTMMGVSNVAMSSMGRQLSNDNLPGREVGGQQWKSSTSILAQAWKDDIDAGQLLSSVYELFGESVLSFVPKPEACIFL* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02704 540 CDD TAF6C 165 381 IPR011442 GO:0006367
Rops11g02704 540 Pfam TAF6 C-terminal HEAT repeat domain 259 346 IPR011442 GO:0006367
Rops11g02704 540 FunFam transcription initiation factor TFIID subunit 6 164 369 - -
Rops11g02704 540 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 2 537 IPR037796 GO:0000124|GO:0005669|GO:0006367|GO:0016251|GO:0046695
Rops11g02704 540 FunFam transcription initiation factor TFIID subunit 6 1 66 - -
Rops11g02704 540 Pfam TATA box binding protein associated factor (TAF) 1 65 IPR004823 -
Rops11g02704 540 SUPERFAMILY ARM repeat 198 386 IPR016024 -
Rops11g02704 540 MobiDBLite consensus disorder prediction 397 422 - -
Rops11g02704 540 Gene3D Histone, subunit A 1 66 IPR009072 GO:0046982
Rops11g02704 540 Gene3D - 164 369 IPR046344 GO:0006367
Rops11g02704 540 SMART TAF_cls 2 68 IPR004823 -
Rops11g02704 540 SUPERFAMILY Histone-fold 4 76 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02704 Rops-Chr11 46551447 46557410 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02704 K03131 - gmx:100799998 907.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02704 11 46551447 46557410 Rops11g02704 11 46551447 46557410 ECH