Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02692 ATGGTTACAGAGGAAGAAATATCAGAAGCGGTTCAGTCTCTGTTAAGAGAACCAAACCCTAGAGTTCGAAGTTTCACGACGCTGAACCAAGTGGTTCAAGAGCTTCAAGCCAAGCTTGGTGGTCACGACCTAACTCACAAGCTCGATTTCATAACCGCACAGATCAACCTTCTCTACGGTTCCCAACAACAACAACAGCAACCGCATCCTCCGCCGCAAGTTCCGCAGAGGCAGTTACTGCCACCGCAACAACAACAACCACCAACTACTACCCCTAAGGACCATTTTGCCCTTCACCAAAACCCTAATTTCCACACTGCCCCTGTCACTTCCGCTTTTCAGAACTTCCCTTCTAACCCTGCTCCGCCGCTTAAACCCGACGCCGCCGGTGATTCTGCTCGCACTGAAGCTCCTCCGCCTCCTGTTTCGGGAAATGAGGTTCCCAAGGAAAGTACTCAAACTAAGGCAAAGAGAAGAGGTGGTCCAGGAGGACTCAACAAACTTTGTGGTGTTTCGCCTGAACTTCAGGTCATTGTTGGCCAGCCAGCTTTGCCAAGGACTGAGATTGTGAAGCAACTGTGGGCTTACATAAGGAAGAACAATCTCCAAGACCCCAGCAACAAAAGGAAAATAATTTGCAATGATGAACTGCGTGTGGTGTTTGAGACCGATTGTACTGATATGTTCAAGATGAATAAGTTACTAGCTAAACACATAATCCCCCTTGAACCAACCAAGCAACCTGTTCCAAAGAAGCAGAAGGTAGATGTGGAGTCAGGAACAAAAAGTGCTGAACCTGCTCCTTCTGTAATAATATCTGATGCACTTGCTAACTTTTTTGGCATTACTGGAAGGGAGATGCTACAGTCAGAGGTTCTGAGACGTATTTGGGAGTACATAAAGGTGAACCAGCTAGAGGATCCTGTGAATCCCATGGCAATAGTGTGTGATGCAAAGCTTCAGGAGATCTTTGGCTGTGAAAGCATTTCAGCATTGGGGATACCTGAAGTTTTGGGCCGTCATCATATTTTTAGGAGATCATGA 1044 0.4684 MVTEEEISEAVQSLLREPNPRVRSFTTLNQVVQELQAKLGGHDLTHKLDFITAQINLLYGSQQQQQQPHPPPQVPQRQLLPPQQQQPPTTTPKDHFALHQNPNFHTAPVTSAFQNFPSNPAPPLKPDAAGDSARTEAPPPPVSGNEVPKESTQTKAKRRGGPGGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRVVFETDCTDMFKMNKLLAKHIIPLEPTKQPVPKKQKVDVESGTKSAEPAPSVIISDALANFFGITGREMLQSEVLRRIWEYIKVNQLEDPVNPMAIVCDAKLQEIFGCESISALGIPEVLGRHHIFRRS* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02692 347 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 1 60 IPR014876 -
Rops11g02692 347 CDD SWIB-MDM2_like 169 239 - -
Rops11g02692 347 SUPERFAMILY SWIB/MDM2 domain 260 342 IPR036885 -
Rops11g02692 347 Pfam DEK C terminal domain 2 57 IPR014876 -
Rops11g02692 347 ProSiteProfiles SWIB/MDM2 domain profile. 164 241 IPR003121 -
Rops11g02692 347 CDD SWIB-MDM2_like 270 341 - -
Rops11g02692 347 MobiDBLite consensus disorder prediction 68 88 - -
Rops11g02692 347 Gene3D - 1 59 - -
Rops11g02692 347 MobiDBLite consensus disorder prediction 61 167 - -
Rops11g02692 347 ProSiteProfiles SWIB/MDM2 domain profile. 265 344 IPR003121 -
Rops11g02692 347 SUPERFAMILY SWIB/MDM2 domain 158 245 IPR036885 -
Rops11g02692 347 Gene3D SWIB/MDM2 domain 160 248 IPR036885 -
Rops11g02692 347 Gene3D SWIB/MDM2 domain 260 346 IPR036885 -
Rops11g02692 347 MobiDBLite consensus disorder prediction 89 118 - -
Rops11g02692 347 SMART swib_2 269 347 IPR019835 -
Rops11g02692 347 SMART swib_2 165 244 IPR019835 -
Rops11g02692 347 Pfam SWIB/MDM2 domain 271 341 IPR003121 -
Rops11g02692 347 Pfam SWIB/MDM2 domain 169 239 IPR003121 -
Rops11g02692 347 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 249 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02692 Rops-Chr11 46412945 46417590 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Rops11g02692 SWIB 1.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02692 - - aprc:113854239 505.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02692 11 46412945 46417590 Rops11g02692 11 46412945 46417590 ECH