Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02584 ATGGATGAAGGTGAGGGAGGGGATCCCATGGATCAGTTCCATCGCAACGAAGCTATATCCGCTGTTGCTGATGAGGGTTTCTTGGCCGAGGAAGACGATGATTACGAGGATCTTTACAATGATGTCAATGTTGGTGAGGGGTTTCTTCAATCGTTGAGAAAGAACGAGGATTCGGGGTCAAGAAACGACGACGTTGAGGACAAGAAGCAGCAGCAGTCGGGTCCGGCGATGCAAGATCCCGGTGGGGTTTCGATACCGGGTGTCGGTGGTGGTGGTGGTGGTGAGGGTACTGGTGGTGGTGGTGGGGAATTGAGGGTTTCTGGGTTTCAGAATCAGGGGTTTAGAGGGGGTAATTCTGGAAGTGGAGGTGGATCGGGTGGGATTAGGGTGGAATTAGTGCAGGCAAGTGGGAAATTGAGTGAAATTCAGGAGCAGAGTGGTAATGATGGTGGTGGAGTGCAGGGGATTGGACAACAACAGCATAGTGGAGTTGTTGGGAATGTGGGAAATGAGGGTTTGGTGAGACAATGTCAAGGTGGTGGAGGAGGGGGAAATCTTAATAGGGCTGGTGGAAATGGGGTTGGGAATAGTGTGAGCGCTGTTAGTGGTGTTAGTACTGGAGGAGGTGGTGGAGGTAGTGTGGGTGCAGGTGGTGGTGGTGGTGGTGGTGGAGGTACTCCTGCTGGGGGTACTATATTATTTGTGGGTGATTTGCATTGGTGGACTACTGATGCTGAGCTGGAGGCTGAACTTTGTAAGTATGGGCAAGTGAAGGAGGTGAAGTTTTTCGATGAGAAAGCCAGTGGGAAATCAAAAGGGTATTGTCAGGTTGAGTTTTATGAAGCTTATGCTGCGACTGCTTGTAAGGAAGGGATGAATGGACATGTGTTTAATGGGAGGCCATGCGTTGTTGCTTTTGCGTCGCCATTTACTGTTAAGAAAATGGGAGAGGCTCAGTTAAATAGGAATCAACAGATGAACCCATCTGCAACTAACCAAGGAAGGAGGGGGCCTGGTGGTGATGCAGGGGCTAAGCCGGGTGGTAGTAATATCGTGACGGGTGGGAACTATCAAGGTGGAGATGGCAACAGGGGTTATGGAAGAGGTAACTGGGGAAGAGGGAATAATCCTGGGATGGGGAATAGAGGGCCTGTTAATGCAATGAGGAATAGAGGTGGTGGCATGGGTGGTAGAGGTATAATGGGTAATGGTGGAAATGGATTTGGACAGGGTATTGGTGCTACCCCACCTCTGTTGCATCATCAATCAATGATGAATCAAGGTTTTGATCCTGCATTTGGTGGTCCCATGGGTAGAATGGGAAGCTATGGAGGATTTCCCGGTGCTCCGACACCTCCATTCTCTGGAATTTTACCTTCATTCCCTGGTGTTGGTGGTGTTGGTTTGCCTGGAGTAGCACCTCATGTTAATCCAGCCTTTTTTGGTAGAGGGATGCCTGTGAACGGTATGGGGATGATGCCTTCATCAGGCATGGATGGTCCTAATATGGGAATGTGGCCGGATCCAAATATGGGTGGATGGGGTGGTGAGGAGCCTGGTGGTGGCAGGGCTGGAGAGTCAAGTTATGGGGAGGAAGCTGCATCAGACCATCAGTATGGTGAGGTGAGTCATGATAGACCTGGTTGGCCTAATGCTATGAGGGATAAAGATAGAGGATCGGAAAGGGACTGGTCTGGTTCTTCTGAAAGAAGGTACAGGGATGATAGAGATCAAGGATATGAGAGAGATGCACCTAGAGAAAAAGATATGGGCCAAGACCATGAATGGTCTGAACGAAAGCACCGTGATGATAGGGAAATGAGCCGAGCACGATCTCGGGACCGTGAACGATCTCGTGATCGTGAACGATCTCGGGATCGTGACCGAGACGGTGACCGTCATAGATACAGGGAAGATAGGGACAGGTATGCTGATCACCATAAATACAGAGACCGGGAGGCAGAGCATGAGGATGAGTGGGAACGGGGACGATCGTCAAGGACTCACAGCAAATCACGATTATCGCAGGAGGAGGAACACCATTCGAGGCCAAAAGATGCTGATTATGGGAAGAGGAGGCGACTTACCTCTGAGTAA 2097 0.5021 MDEGEGGDPMDQFHRNEAISAVADEGFLAEEDDDYEDLYNDVNVGEGFLQSLRKNEDSGSRNDDVEDKKQQQSGPAMQDPGGVSIPGVGGGGGGEGTGGGGGELRVSGFQNQGFRGGNSGSGGGSGGIRVELVQASGKLSEIQEQSGNDGGGVQGIGQQQHSGVVGNVGNEGLVRQCQGGGGGGNLNRAGGNGVGNSVSAVSGVSTGGGGGGSVGAGGGGGGGGGTPAGGTILFVGDLHWWTTDAELEAELCKYGQVKEVKFFDEKASGKSKGYCQVEFYEAYAATACKEGMNGHVFNGRPCVVAFASPFTVKKMGEAQLNRNQQMNPSATNQGRRGPGGDAGAKPGGSNIVTGGNYQGGDGNRGYGRGNWGRGNNPGMGNRGPVNAMRNRGGGMGGRGIMGNGGNGFGQGIGATPPLLHHQSMMNQGFDPAFGGPMGRMGSYGGFPGAPTPPFSGILPSFPGVGGVGLPGVAPHVNPAFFGRGMPVNGMGMMPSSGMDGPNMGMWPDPNMGGWGGEEPGGGRAGESSYGEEAASDHQYGEVSHDRPGWPNAMRDKDRGSERDWSGSSERRYRDDRDQGYERDAPREKDMGQDHEWSERKHRDDREMSRARSRDRERSRDRERSRDRDRDGDRHRYREDRDRYADHHKYRDREAEHEDEWERGRSSRTHSKSRLSQEEEHHSRPKDADYGKRRRLTSE* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02584 698 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 15 634 IPR034772 -
Rops11g02584 698 MobiDBLite consensus disorder prediction 49 127 - -
Rops11g02584 698 MobiDBLite consensus disorder prediction 143 167 - -
Rops11g02584 698 Gene3D - 223 317 IPR012677 -
Rops11g02584 698 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 233 302 IPR000504 GO:0003723
Rops11g02584 698 MobiDBLite consensus disorder prediction 322 423 - -
Rops11g02584 698 MobiDBLite consensus disorder prediction 537 698 - -
Rops11g02584 698 MobiDBLite consensus disorder prediction 499 698 - -
Rops11g02584 698 MobiDBLite consensus disorder prediction 143 166 - -
Rops11g02584 698 SMART rrm1_1 232 305 IPR000504 GO:0003723
Rops11g02584 698 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 231 309 IPR000504 GO:0003723
Rops11g02584 698 SUPERFAMILY RNA-binding domain, RBD 228 337 IPR035979 GO:0003676
Rops11g02584 698 MobiDBLite consensus disorder prediction 56 70 - -
Rops11g02584 698 CDD RRM_CFIm68_CFIm59 233 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02584 Rops-Chr11 44166192 44168288 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02584 K14398 - gmx:100813702 825.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02584 11 44166192 44168288 Rops11g02584 11 44166192 44168288 ECH