Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01978 ATGTCTCAAGATACGAATATGGATCATCATGAGGATGACCGCAACGGAGGTGAAAGTAATAACAAACAAGATGATGAGGAAGCTGTTGCTCATCTTGAGGAAATAAAAAAATCAATTGAGGCAAAGATGGCTTTACGTCAAAGCAATTTGAATCCTGACAGGCCTGACTCAGGATTTTTAAGGACATTGGATTCTAGCATTAAGCGCAACACTGCAGTTATTAAGAAACTGAAACAGATTAATGAAGAGCAGCGTGAATCACTGATGGATGAGTTGCGAAGTGTGAACTTAAGCAAATTTGTCAGTGAAGCCGTGGCAGCCATATGTGATGCCAAGCTTAGAAGTTCTGATATACAAGCAGCAGTTCAGATCTGCTCTTTGCTTCATCAAAGGTACAAGGACTTCGCTCCAAGCCTGATTCAAGGGCTTCTCAAAGTCTTCTCTCCTGGAAAACCTGGTGATGAATCAGATGCAGACCGAAACTCGAAGGCAATGAAGAAACGGAGCTCTCTGAAACTTCTATTGGAACTTTTCTTTGTTGGGGTTATTGAAGATGGTGGCATTTTTATCAATATCATAAAAGATCTTACCAGTATGGAACAGTTAAAAGATCGGGATGCTACACAAACAAGTTTGACCCTTCTTTCTAGCTTTGCTCGGCATGGGAGAATTTTTCTAGGACTTTCTGTTACTGGGCCAGAAATTCATGAAGAGTTTTTTAAAGGCCTTAACATCACGGCAGATCAGAAGAAAGTTTTCCGGAAAGCATGTTATGCATTTTATGATGCTGCAGCTGAACTACTTCAGTCTGAGCATTCTCTTGAAAATTCTAAGATTTTGAATGCAAAAGGAGAGCTCAGCGATGAAAATATCGCTTCATATGAGAAGCTTCGTAAATTCTATGACCATTTGTATCGTAATGTCTCATCATTAGCAGAAGCACTTGATATGCAGCCCCCTGTAATGCCAGAGGATGGTCACACAACAAGGGTTACTAGTGGTGAGGAGGCTATTTCTTCCGCTGTTGGGAAAGATTCTTCTGTTGTTGAACCCATATGGGATGATGAAGATACAAGGGCTTTCTATGAATGTTTACCTGATCTTAGAGCTTTTGTTCCTGCTGTGCTTTTGGGAGAAACGGAACCAAAAATCAATGAGCAATCTGTAAAGAGTCAAGAACAATCAACTGAAATATTACCTGAATCTGACAAAGGTCAACTGGCCTCCAATGAAAGTGGAGAGGCCTCCACAGAGTCTAGTGTTTTGCCAGAGGGAGAAAGCATAGAAAGAGCAAAGGATAAAGAAGAAAAAGAGAAGTCTAAAGAATTGGACAAAGAGAAGGAAAAAGAAAAAGAAAATGACAAAAAGGGGGAACATGAAAAAGACAAGCTCAGAAGTCTTGAAGGGACAAATTTGGATGCTCTATTGCAGAGGCTTCCGGGTTGTGTCAGCCGTGACCTTATAGACCAATTAACTGTGGAGTTCTGTTATCTAAATTCAAAATCAAATCGGAAAAAGCTTGTGAGGGCTTTGTTCAATGTACCAAGGACATCTCTGGAACTGCTACCATATTATTCACGCATGGTTGCTACACTCTCAACTTGTATGAAGGATGTCTCCTCAATTCTCTTGCAGATGTTGGAGGAGGAATTCAACTTCTTAATAAATAAAAAGGATCAGATGAACATTGAGACAAAGATAAGGAATATCAGGTTCATTGGAGAACTTTGCAAGTTCAAAATTTCCCCTGCTGGCCTAGTCTTCAGTTGTTTGAAGGCCTGTTTAGATGATTTTACTCATCACAACATTGACGTAGCTTGCAATCTTCTTGAAACATGTGGCCGTTTTCTGTATCGGTCTCCAGAAACTACTATACGTATGGCTAACATGTTGGAGATACTGATGCGCTTGAAAAATGTCAAAAACTTGGATCCCAGACATAGCACTTTGGTGGAGAATGCATACTACCTTTGCAAGCCACCAGAAAGGTCTGCACGAGTAGCTAAAGTCCGTCCTCCGTTGCATCAGTATATCAGAAAATTACTTTTCTCTGATCTTGATAAGTCTACCATTGAGCATGTGCTGAGGCAACTTCGTAAATTACCATGGAGTGAATGTGAAGCATATCTTTTAAAATGCTTCATGAAGGTCCACAAAGGCAAATATGGTCAGATCCACCTGATTGCATCTCTTGCTGCTGGGTTAAGTCGCTATCATGATGAGTTCGCTATAGCTATAGTTGATGAGGTTTTGGAGGAGATTAGAATTGGGCTAGAACTAAATGACTATGGGATGCAGCAAAGACGCATTGCCTACATGCGATTCTTGGGGGAGCTTTACAACTACAAGCATGCAGACTCATCTGTAATTTTTGAGACTCTATATCTCATTCTTGTATATGGCCACGGGACACCAGAGCAAGATGTTCTCGATCCACCTGAAGATTTTTTCCGTGTAAGGTTGATCATTACTCTGCTTGAAACTTGTGGGCATTACTTTGATCATGGCTCTTCTAAGAGGAAACTTGATCGATTCCTGATTCACTTCCAGAGATATATTTTAAGCAAAGGTGTACTGCCTCTGGACGTTGAATTTGACTTGCAGGATCTGTTTGCGGACTTGCGTCCCAATATGGTTCGTTATACTTCTGTTGAGGAAGTGAATGCAGCTCTAGTAGAACTCGAGGAGCATGATCATATAGTTTCTGCTGACAAGGCCAGTAGTGAAAAACATTCTGACACCGAGAAGCCTTTAAATAGGACCACTTCCACCACGGTGGTTGGCAATGGACAGAGTATTGATAATGGTGCAGAGGAAAATGGAGTGCAAGATGATGTTAATGATGGTGAGCCTGATTCAGGTAGTGACATAATTGACGAGGAAGGACATGATGATGAAGAGTTGGATGAGGGGAATCATGATGATGGGTGTGAGACTGAGGACGATGATGATGACGATGATGATGGGCCTGGACCTGCTTCTGATGAGGAAGATGAAGTCCATGTGAGACAGAAGGTGACAGAGGTGGACCCTCTGGAAGAAGCCAATTTTGAACAGGAGCTCAAGGCTGTACTACAGGAGAGTATGGAACAGCGAAGGCTGGAGCTACGAGGCCGGCCTACGTTGAACATGATGATTCCAATGAATGTATTTGAGGGATCTGCCAAGGATCATCATGGGAGAGGAATAGGTGGTGAAAGTGGTGATGAGGCCCTGGATGAGGATACTGATGGAAACAAAGAGGTTCAGGTGAGAGTTCTCGTGAAGCGTGGGAACAAGCAACAAACAAAGCAGATGTTCATCCCGCTGAATTCCTCGCTGGTGCAGAGTACAAAACAGAAAGAAGCAGCTGAGCTTCAAGAGAAAGAAGACATTAAGAGGCTTGTCTTGGAGTATAATGATAGAGAAGAGGAGGAGCTTAATGGATTAGGGACCCAGCCAACGAACTGGATGCAGAGTGGAGGTAGCAAGGCTGGTGGCCGTGGCCACACTTTAGAAGGAACCAGTGGCAGGAGTGGTGGATCACGACATCGGCATCATAATTATTCCGGCAGTGGAGTCTACTATGGCAGAAGAAAGTGA 3582 0.4252 MSQDTNMDHHEDDRNGGESNNKQDDEEAVAHLEEIKKSIEAKMALRQSNLNPDRPDSGFLRTLDSSIKRNTAVIKKLKQINEEQRESLMDELRSVNLSKFVSEAVAAICDAKLRSSDIQAAVQICSLLHQRYKDFAPSLIQGLLKVFSPGKPGDESDADRNSKAMKKRSSLKLLLELFFVGVIEDGGIFINIIKDLTSMEQLKDRDATQTSLTLLSSFARHGRIFLGLSVTGPEIHEEFFKGLNITADQKKVFRKACYAFYDAAAELLQSEHSLENSKILNAKGELSDENIASYEKLRKFYDHLYRNVSSLAEALDMQPPVMPEDGHTTRVTSGEEAISSAVGKDSSVVEPIWDDEDTRAFYECLPDLRAFVPAVLLGETEPKINEQSVKSQEQSTEILPESDKGQLASNESGEASTESSVLPEGESIERAKDKEEKEKSKELDKEKEKEKENDKKGEHEKDKLRSLEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSSILLQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKISPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVAKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWSECEAYLLKCFMKVHKGKYGQIHLIASLAAGLSRYHDEFAIAIVDEVLEEIRIGLELNDYGMQQRRIAYMRFLGELYNYKHADSSVIFETLYLILVYGHGTPEQDVLDPPEDFFRVRLIITLLETCGHYFDHGSSKRKLDRFLIHFQRYILSKGVLPLDVEFDLQDLFADLRPNMVRYTSVEEVNAALVELEEHDHIVSADKASSEKHSDTEKPLNRTTSTTVVGNGQSIDNGAEENGVQDDVNDGEPDSGSDIIDEEGHDDEELDEGNHDDGCETEDDDDDDDDGPGPASDEEDEVHVRQKVTEVDPLEEANFEQELKAVLQESMEQRRLELRGRPTLNMMIPMNVFEGSAKDHHGRGIGGESGDEALDEDTDGNKEVQVRVLVKRGNKQQTKQMFIPLNSSLVQSTKQKEAAELQEKEDIKRLVLEYNDREEEELNGLGTQPTNWMQSGGSKAGGRGHTLEGTSGRSGGSRHRHHNYSGSGVYYGRRK* 1194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01978 1193 MobiDBLite consensus disorder prediction 1056 1078 - -
Rops11g01978 1193 FunFam Regulator of nonsense transcripts UPF2 672 902 - -
Rops11g01978 1193 Gene3D - 19 323 - -
Rops11g01978 1193 MobiDBLite consensus disorder prediction 1 29 - -
Rops11g01978 1193 Gene3D - 672 901 - -
Rops11g01978 1193 MobiDBLite consensus disorder prediction 941 994 - -
Rops11g01978 1193 PANTHER NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2 24 1141 IPR039762 GO:0000184
Rops11g01978 1193 MobiDBLite consensus disorder prediction 918 938 - -
Rops11g01978 1193 SUPERFAMILY ARM repeat 75 192 IPR016024 -
Rops11g01978 1193 MobiDBLite consensus disorder prediction 902 917 - -
Rops11g01978 1193 Coils Coil 431 453 - -
Rops11g01978 1193 Pfam Up-frameshift suppressor 2 995 1131 IPR007193 -
Rops11g01978 1193 MobiDBLite consensus disorder prediction 385 423 - -
Rops11g01978 1193 FunFam Regulator of nonsense transcripts UPF2 431 669 - -
Rops11g01978 1193 FunFam Regulator of nonsense transcripts UPF2 19 323 - -
Rops11g01978 1193 SMART if4_15 67 298 IPR003890 GO:0003723|GO:0005515
Rops11g01978 1193 SMART if4_15 676 877 IPR003890 GO:0003723|GO:0005515
Rops11g01978 1193 SMART if4_15 473 661 IPR003890 GO:0003723|GO:0005515
Rops11g01978 1193 MobiDBLite consensus disorder prediction 1138 1193 - -
Rops11g01978 1193 Coils Coil 544 564 - -
Rops11g01978 1193 MobiDBLite consensus disorder prediction 902 1014 - -
Rops11g01978 1193 SUPERFAMILY ARM repeat 470 664 IPR016024 -
Rops11g01978 1193 Pfam MIF4G domain 476 660 IPR003890 GO:0003723|GO:0005515
Rops11g01978 1193 Pfam MIF4G domain 678 872 IPR003890 GO:0003723|GO:0005515
Rops11g01978 1193 MobiDBLite consensus disorder prediction 385 464 - -
Rops11g01978 1193 Gene3D - 1085 1109 - -
Rops11g01978 1193 MobiDBLite consensus disorder prediction 425 464 - -
Rops11g01978 1193 SUPERFAMILY ARM repeat 671 896 IPR016024 -
Rops11g01978 1193 Gene3D - 429 671 - -
Rops11g01978 1193 Coils Coil 22 42 - -
Rops11g01978 1193 MobiDBLite consensus disorder prediction 995 1014 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01978 Rops-Chr11 31979039 31997455 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01978 K14327 - gmx:100786092 2021.13