Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01970 ATGAACTTCAGGTTCCAGAACCTTCTCGGAGCTCCCTACAGAGGTGGCAACGTCGTCATATCCAAAAACACCTTGCTACTCTCACCCGTCGGTAACCGAGTCTCCGTCACCGACCTCATCAAATCCGAAACCACCACCCTCCCCATCCAATCCTCCTCCAACATCTCCCGCATCGCCGTCTCCCCCGACGGCACCTTCCTCCTCGCCGTCGATGACCGTAACCGCTGTCTCTTCATCAACCTCCGTCGCCGCGCCCTCCTCCACCGCATCACCTTCAAGCACCGTGTCGCCGCCGTCAAATTCTCCCCCGATGGCGCCCTCATTGCGGTCGCCGCCGGGAAACTCGTACAGATCTGGCGCTCCCCTGCCTTTCGAAAAGAGTATTTCCCCTTTGAGCTCGTTCGAACCTTCGCTGATTTCGATACCAAAATCACCTCCTTTGATTGGAGCCCCGATTCCACTTACTTGCTCGTAGGGAGCAAGGACCTAACCGCGAGAATATTGTGTTTGAAGAAAATGAGTAATGTTGTAAAGTACAAACCTTTTTTGTTTTTAGGTCATAGGGATGCGGTTATAGCTGCGTTTTTTGGTGTTGATTCGAAAACTAATAGGGTTTATAAGGCTTACACGGTTACTAGGGATTGCTATTTGTTTAGTTGGGGTTTTACTAATGAGGAGGGATCAGCTCCGCCCTCGCCGGGGACGCCGGATAGGGATTTGGAAGGGAATTTGATGGTTGAGGACAATGGTGATGTTAAGAAGAGGAAGGAACGTGAAATTGAGGATGATGATGAAGGGTACTTATGTAAAGGGAAGTGGGAGTTGTTGAGGAAGGATGGTTTTATGCAGGCGCAGGCTAGGGTGACCGCGTGTGATTATCACAGAGGGATGGATATGGTGGTTGTTGGATTTTCAAATGGTGTGTTTGGGTTGTATCAGATGCCGGAGTTTGTGTGTATTCACATGTTGTCTATATCAAGGGAGAAGATCACCACTGCATTGTTTAATGAGCTTGGGAATTGGTTGACCTTTGGCTGTGCCAAATTGGGTCAGCTTCTTGTGTGGGAGTGGCGGTCTGAGAGCTATATCTTGAAGCAGCAGGGTCATTACTTTGATGTCAATTGTGTTGGGTACTCGCAGGATTCCCAACTCCTTGCTACTGGATCAGATGATAATAAAGTGAAGGTGTGGACTGTCTCCTCTGGATTTTGCTTTGTTACATTTTCTGAGCACACTAATGCTGTTACGGCCCTGCATTTTACAACAAGTAACAATTGCCTGCTTAGTGCATCTCTTGATGGGACTGTTCGAGCATGGGATTTGTTACGCTATCGCAATTTTAGGACGTTTACAACCCCTTCTTCAAGACAGTTTGTTTCTTTGACAGCAGATCAAAGTGGCGAAGTGATATGTGCTGGCACTTCAGATTCCTTTGAGATTTTTGTTTGGTCAATGAGAACCGGCCGTTTGTTGGATGTGCTTAGTGGTCATGAAGCTCCTGTTCATGGGCTAATGTTCTCTCCTACAAATGCTATCTTGGCTTCATCGTCATGGGACAAAACTGTTCGGTTGTGGGATGTCTTTGATGGAAAAGGAGCGGTTGAAACAATGCCTCACACACATGATGTTCTCACAGTTGTTTATCGTCCAGATGGAAGGCAGTTAGCTTGCAGCACATTAGATGGGCAGATTTATTTCTGGGATCCAATTGAAGGTTTGCTGATGTACACCATAGAAGGTTCTAGAGATATTGCTGGAGGTCGTCTTATGACTGATCGCAGATCAGCTGCTAACACAACATCAGGGAAGTGCTTCACAACCTTGTGTTATTCTGCTGATGGAAGCTACATATTAGCTGGGGGCAATAGCAGATATATCTGCATGTATGATGTTGCTGATCAGGTATTGCTGCGACGTTTCCAGATAACACACAATCTCTCACTAGATGGAGTGCTTGACTTTTTAAACTCGAAGAATATGACAGAAGCTGGCCCACTAGATTTGATTGACGACGATAACAGTGACATTGAAGAAGGTGTTGAAAAACAAACACAAGGGAAAATAGGATTAGACTTGCCAGGATCCATGCCTAACCGTGGAAGACCTGTTATTCAAACAAAATGCCTGAGAATTGCACCTACAGGGCGGAGTTTTGTTGCAGCAACAACTGAGGGAGTTTTAGTTTATTCAGTTGATGAATCATTCATATTTGATCCAACTGACCTAGACATAAATGTTACACCAGAGGCTGTTGATGAAGCTCTTAATGAAAATCAACCAAGTAGGGCTTTGATCCTTAGCCTTCGCTTAAATGAGGACTCGATCATAAAAAAATGTATTTTTGCTGTTAGTCCAGCAGATATTCCGGCTGTTGCCACATCAATCCCTTACAGATATCTCCAGCGATTAATTGAAGCACTTGCAGTTCTTCTTGAAAACTGTCCACATTTGGAATTTATACTTCGATGGTGTCAGGAGCTCTGTAAAGCCCATGGGAATTCTATTCAGAAGAACTCTAGAAATCTGCTCCCATCATTAAAATCTATGCAGAAAGCAATCACTGCAATACATCAGGACCTAGCTGATACATGCTCCTCCAATGAATATATGCTGCGATATTTATGCTCTTCTGGTGCCAAGAAATGA 2646 0.4524 MNFRFQNLLGAPYRGGNVVISKNTLLLSPVGNRVSVTDLIKSETTTLPIQSSSNISRIAVSPDGTFLLAVDDRNRCLFINLRRRALLHRITFKHRVAAVKFSPDGALIAVAAGKLVQIWRSPAFRKEYFPFELVRTFADFDTKITSFDWSPDSTYLLVGSKDLTARILCLKKMSNVVKYKPFLFLGHRDAVIAAFFGVDSKTNRVYKAYTVTRDCYLFSWGFTNEEGSAPPSPGTPDRDLEGNLMVEDNGDVKKRKEREIEDDDEGYLCKGKWELLRKDGFMQAQARVTACDYHRGMDMVVVGFSNGVFGLYQMPEFVCIHMLSISREKITTALFNELGNWLTFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCVGYSQDSQLLATGSDDNKVKVWTVSSGFCFVTFSEHTNAVTALHFTTSNNCLLSASLDGTVRAWDLLRYRNFRTFTTPSSRQFVSLTADQSGEVICAGTSDSFEIFVWSMRTGRLLDVLSGHEAPVHGLMFSPTNAILASSSWDKTVRLWDVFDGKGAVETMPHTHDVLTVVYRPDGRQLACSTLDGQIYFWDPIEGLLMYTIEGSRDIAGGRLMTDRRSAANTTSGKCFTTLCYSADGSYILAGGNSRYICMYDVADQVLLRRFQITHNLSLDGVLDFLNSKNMTEAGPLDLIDDDNSDIEEGVEKQTQGKIGLDLPGSMPNRGRPVIQTKCLRIAPTGRSFVAATTEGVLVYSVDESFIFDPTDLDINVTPEAVDEALNENQPSRALILSLRLNEDSIIKKCIFAVSPADIPAVATSIPYRYLQRLIEALAVLLENCPHLEFILRWCQELCKAHGNSIQKNSRNLLPSLKSMQKAITAIHQDLADTCSSNEYMLRYLCSSGAKK* 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01970 881 ProSiteProfiles Trp-Asp (WD) repeats profile. 536 568 IPR001680 GO:0005515
Rops11g01970 881 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 408 441 - -
Rops11g01970 881 FunFam Periodic tryptophan protein 2 446 644 - -
Rops11g01970 881 PANTHER WD40 REPEAT PROTEIN 1 880 IPR027145 -
Rops11g01970 881 Pfam WD domain, G-beta repeat 404 440 IPR001680 GO:0005515
Rops11g01970 881 Pfam WD domain, G-beta repeat 134 167 IPR001680 GO:0005515
Rops11g01970 881 Pfam WD domain, G-beta repeat 489 526 IPR001680 GO:0005515
Rops11g01970 881 Pfam WD domain, G-beta repeat 540 568 IPR001680 GO:0005515
Rops11g01970 881 Pfam WD domain, G-beta repeat 367 397 IPR001680 GO:0005515
Rops11g01970 881 Pfam Dip2/Utp12 Family 771 876 IPR007148 -
Rops11g01970 881 ProSitePatterns Trp-Asp (WD) repeats signature. 427 441 IPR019775 -
Rops11g01970 881 FunFam Periodic tryptophan protein 2 22 243 - -
Rops11g01970 881 Gene3D - 277 477 IPR015943 GO:0005515
Rops11g01970 881 ProSiteProfiles Trp-Asp (WD) repeats profile. 366 407 IPR001680 GO:0005515
Rops11g01970 881 CDD WD40 319 621 - -
Rops11g01970 881 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 366 402 - -
Rops11g01970 881 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 494 527 - -
Rops11g01970 881 Gene3D - 21 230 IPR015943 GO:0005515
Rops11g01970 881 ProSiteProfiles Trp-Asp (WD) repeats profile. 494 535 IPR001680 GO:0005515
Rops11g01970 881 ProSiteProfiles Trp-Asp (WD) repeats profile. 408 449 IPR001680 GO:0005515
Rops11g01970 881 SUPERFAMILY DPP6 N-terminal domain-like 10 197 - -
Rops11g01970 881 SUPERFAMILY WD40 repeat-like 128 573 IPR036322 GO:0005515
Rops11g01970 881 SMART WD40_4 359 398 IPR001680 GO:0005515
Rops11g01970 881 SMART WD40_4 316 356 IPR001680 GO:0005515
Rops11g01970 881 SMART WD40_4 487 526 IPR001680 GO:0005515
Rops11g01970 881 SMART WD40_4 401 440 IPR001680 GO:0005515
Rops11g01970 881 SMART WD40_4 530 568 IPR001680 GO:0005515
Rops11g01970 881 SMART WD40_4 130 169 IPR001680 GO:0005515
Rops11g01970 881 SMART WD40_4 83 120 IPR001680 GO:0005515
Rops11g01970 881 SMART WD40_4 591 630 IPR001680 GO:0005515
Rops11g01970 881 SMART WD40_4 45 80 IPR001680 GO:0005515
Rops11g01970 881 SMART WD40_4 443 484 IPR001680 GO:0005515
Rops11g01970 881 SUPERFAMILY WD40 repeat-like 539 732 IPR036322 GO:0005515
Rops11g01970 881 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 536 568 - -
Rops11g01970 881 Gene3D - 478 661 IPR015943 GO:0005515
Rops11g01970 881 PRINTS G protein beta WD-40 repeat signature 513 527 IPR020472 -
Rops11g01970 881 PRINTS G protein beta WD-40 repeat signature 385 399 IPR020472 -
Rops11g01970 881 PRINTS G protein beta WD-40 repeat signature 427 441 IPR020472 -
Rops11g01970 881 ProSitePatterns Trp-Asp (WD) repeats signature. 513 527 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01970 Rops-Chr11 31857754 31865303 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01970 465 746 Miscellaneous Gene Families AT5G08390 20.833 4.66e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01970 K14558 - gmx:100793629 1576.99