Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01929 ATGCTGGTTGTTATGTGTCTTTGGGCTTGGTTTGGATCCTTGGCTTGTGTAAATTCTGATGATGGGTTGAGGAGGGTTAGTCTAAAAAGGAGGAATTTAGACTTTCACAGATTTAATGCTGCAAGGATCAAAGAGGCTGTTCATCCCAGAGATATAGGGAATGTTAATAAAAATTGTTGCACTGAAGATATAGTGTATCTTAAGAATTATCTTGATGCACAATATTTTGGGGAAATTAGCATAGGTACACCCCCACAATACTTCAATGTTGTGTTTGACACTGGCAGCTCCAATCTTTGGGTCCCATCTTCCAAATGCATCTTCTCTATTGCTTGCTATTTTCATTCCAAGTATAGATCGAGGTTATCTAGCACTTATACAGAAATTGGATTACCTTGCAAAATCCCTTATGGCCAAGGATACATTTATGGATTATTCAGCCAAGATAATGTTAAAGTTGGGGATATCATCATCAAAGATCAACAATTTGCTGAGATCACAAGGGAAGGATCTTTGGCACTTATAGCCCTTCCATTTGATGGGATACTGGGACTTGGATTCCAGGATATTTCAGTTGGAGAAGTCACACCAGTGTGGTATAATATGATAGAACAAGGGCACATATGCAACAAAATTTTCTCTCTTTGGCTAAATCAAGACCCAACGGCAGAGATTGGGGGTGAGATCGTCTTTGGTGGTATTGACTTCCGGCATTTTAAAGGTGACCACACTTACGTCCCACTTTCCCAAAAGGGTTATTGGCAGATTGAGCTGGGAGATATTCTACTTGGAAATAATTCAACAGGGTTATGTGAGGGTGGCTGTGCTGCAATTGTGGACTCAGGGACATCTTTAATTGCTGGTCCAACTAGTGTTGTGACTCAAATTAACCATGCCATTGGAGCAGAAGGATATGTGAGTTTTGAGTGTAAAAACATTGTCAATAACTATGGGAGTATGATATGGGATTCCTTGATTTCTGGGTTAAATCCTGAATTCTTATGTGTTGACATTGGACTCTGTTCAAATAATGGATTTCATACAACGGATGATGTTATTGAAACAGTGGTGCATAATGAAAGTCTGGGTGGATCGCCAACCAGGGAGAGCCCCTTATGTACTTTCTGTAATATGATTGTATTTTGGATCCAAGTTCAGCTTAAGCAAAGCAATGTAAAGGAAAAAGTATTAAAATATGTGGATGAGCTGTGTGAGAAGCTTCCAAATCCGGAAGGACAATCATTTATAAACTGCAGTAGTGTCGCAGCTATGCCACATATTACATTCATGATTGGAAATAATCCCTTTCCTCTCTCTCCAGAACAGTATACCCTTAGAGTTAAAGAAGGCTGTTCTACCGTCTGCTTTGGTGGTTTTGTTGCTCTAGATGTGACTTCACCACAGGGTCCCCTCTGGGTTCTTGGAAGTATTTTCTTGGGGGCATATCACACGGTGTTTGACTATGGCAATCTCCGTATAGGATTTGCAGAATCTGCATAG 1500 0.402 MLVVMCLWAWFGSLACVNSDDGLRRVSLKRRNLDFHRFNAARIKEAVHPRDIGNVNKNCCTEDIVYLKNYLDAQYFGEISIGTPPQYFNVVFDTGSSNLWVPSSKCIFSIACYFHSKYRSRLSSTYTEIGLPCKIPYGQGYIYGLFSQDNVKVGDIIIKDQQFAEITREGSLALIALPFDGILGLGFQDISVGEVTPVWYNMIEQGHICNKIFSLWLNQDPTAEIGGEIVFGGIDFRHFKGDHTYVPLSQKGYWQIELGDILLGNNSTGLCEGGCAAIVDSGTSLIAGPTSVVTQINHAIGAEGYVSFECKNIVNNYGSMIWDSLISGLNPEFLCVDIGLCSNNGFHTTDDVIETVVHNESLGGSPTRESPLCTFCNMIVFWIQVQLKQSNVKEKVLKYVDELCEKLPNPEGQSFINCSSVAAMPHITFMIGNNPFPLSPEQYTLRVKEGCSTVCFGGFVALDVTSPQGPLWVLGSIFLGAYHTVFDYGNLRIGFAESA* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01929 499 ProSiteProfiles Saposin B type domain profile. 305 345 IPR008139 -
Rops11g01929 499 SUPERFAMILY Saposin 307 408 IPR011001 -
Rops11g01929 499 Pfam Eukaryotic aspartyl protease 74 497 IPR033121 -
Rops11g01929 499 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 52 497 IPR001461 GO:0004190|GO:0006508
Rops11g01929 499 Pfam Saposin-like type B, region 2 309 341 IPR008138 -
Rops11g01929 499 SUPERFAMILY Acid proteases 4 497 IPR021109 -
Rops11g01929 499 ProSiteProfiles Saposin B type domain profile. 369 410 IPR008139 -
Rops11g01929 499 Gene3D - 305 408 - -
Rops11g01929 499 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 277 288 IPR001969 GO:0004190|GO:0006508
Rops11g01929 499 Gene3D Acid Proteases 234 499 IPR021109 -
Rops11g01929 499 Gene3D Acid Proteases 24 233 IPR021109 -
Rops11g01929 499 FunFam Lysosomal aspartic protease 61 303 - -
Rops11g01929 499 PRINTS Pepsin (A1) aspartic protease family signature 227 240 IPR001461 GO:0004190|GO:0006508
Rops11g01929 499 PRINTS Pepsin (A1) aspartic protease family signature 472 487 IPR001461 GO:0004190|GO:0006508
Rops11g01929 499 PRINTS Pepsin (A1) aspartic protease family signature 81 101 IPR001461 GO:0004190|GO:0006508
Rops11g01929 499 PRINTS Pepsin (A1) aspartic protease family signature 277 288 IPR001461 GO:0004190|GO:0006508
Rops11g01929 499 ProSiteProfiles Peptidase family A1 domain profile. 75 496 IPR033121 -
Rops11g01929 499 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 90 101 IPR001969 GO:0004190|GO:0006508
Rops11g01929 499 Pfam Saposin-like type B, region 1 371 408 IPR007856 GO:0006629
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01929 Rops-Chr11 31135601 31140348 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01929 K08245 - gmx:100500551 863.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01929 11 31135601 31140348 Rops11g01929 11 31135601 31140348 ECH